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[180880_at]

Description K06H6.1 /REP_DB=WormBase Gene ID /WP=CE11828 /TR=O17109 /GB=AAB70361.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 47      6grp_total > 21      4grp_total > 40      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 31.5
(-3)
P 		74.8
(1.3)
P 		91.3
(3)
P 		61.2
(-0)
P 		60
B 29.6
(-0.6)
P 		8.1
(-3)
A 		62.1
(3)
P 		35.5
(0)
P 		54
C 53.4
(-0.6)
P 		46
(-3)
P 		61.8
(2.1)
P 		64.7
(3)
P 		19
avr 38.2
(-3) 		43
(-2.1) 		71.7
(3) 		53.8
(-0.2) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 44.1
(2.3)
M 		17.7
(-3)
A 		24.4
(-1.7)
P 		47.8
(3)
P 		35.5
(0.5)
P 		34.7
(0.4)
P 		30
B 22.7
(-3)
A 		28.7
(-1.1)
P 		41.4
(3)
A 		32.1
(0)
A 		30.8
(-0.4)
A 		36
(1.3)
A 		19
C 32
(-0.6)
P 		64.9
(3)
P 		47.4
(1.1)
M 		17.2
(-2.3)
A 		34.5
(-0.4)
P 		10.5
(-3)
A 		54
avr 32.9
(0.3) 		37.1
(2.7) 		37.7
(3) 		32.4
(-0) 		33.6
(0.7) 		27.1
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 11.5
(-2)
P 		16.2
(-0.1)
P 		23.9
(3)
P 		9
(-3)
P 		15
B 9.4
(0.6)
P 		2
(-3)
A 		14.4
(3)
P 		7.6
(-0.3)
P 		12
C 17.7
(0.8)
P 		13.2
(-1.7)
P 		21.5
(3)
P 		10.9
(-3)
P 		11
avr 12.9
(-0.9) 		10.5
(-2.3) 		19.9
(3) 		9.2
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.1
(-0.5)
M 		6.3
(-2.1)
A 		5.3
(-3)
P 		12.1
(3)
P 		10.7
(1.8)
P 		8.4
(-0.3)
P 		7
B 7.9
(-3)
A 		9.5
(-1.3)
P 		10
(-0.7)
A 		8.5
(-2.3)
A 		12.5
(2)
A 		13.4
(3)
A 		6
C 11.8
(0.1)
P 		19.8
(3)
P 		12.1
(0.2)
M 		3.5
(-3)
A 		11.2
(-0.2)
P 		3.5
(-3)
A 		16
avr 9.3
(-1) 		11.9
(3) 		9.1
(-1.3) 		8
(-3) 		11.5
(2.4) 		8.4
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15697
Sequence Type Exemplar sequence
Representative Public ID K06H6.1 NCBI
Target Description K06H6.1 /REP_DB=WormBase Gene ID /WP=CE11828 /TR=O17109 /GB=AAB70361.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070854 NCBI Caenorhabditis elegans K06H6.1 (K06H6.1) mRNA, complete cds. 11/11 None
SNAP00000016983 ENSEMBL cdna:SNAP chromosome:CEL140:V:588724:589475:1 9/11 None
GENEFINDER00000016992 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:588724:589475:1 9/11 None
K06H6.1 ENSEMBL cdna:known chromosome:CEL140:V:587964:589475:1 gene:K06H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:587963-589475(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H6.1
Entrez Gene 187070 Entrez gene
SwissProt O17109 EMBL-EBI
WormBase CE11828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70361 Hypothetical protein K06H6.1 [Caenorhabditis elegans] ref|NP_503255.1| K06H6.1 [Caenorhabditis elegans] 0.0
blast AAC48047 Hypothetical protein K04A8.1 [Caenorhabditis elegans] ref|NP_504669.1| K04A8.1 [Caenorhabditis elegans] 1.0E-139
blast CAE71910 Hypothetical protein CBG18972 [Caenorhabditis briggsae] 1.0E-130
blast AAB70361 Hypothetical protein K06H6.1 [Caenorhabditis elegans] ref|NP_503255.1| K06H6.1 [Caenorhabditis elegans] 4.0E-91
blast CAE71910 Hypothetical protein CBG18972 [Caenorhabditis briggsae] 3.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503255.1 1 13-31
K06H6.1 1 13-31
Sequence
Target Sequence 
>C. ELEGANS:180880_AT
ggagaagctgggaggccaagcctacggaaatgaaggattgtctgtctatcacgccatgca
atcacaccgtctggatgggatgagtggagttgtgattggaagcatgcagccgtgggttga
agtctcagctcttgtcaatggggcatcaaaaatactaactgtggaatacttcaagttaga
aatccaagaggagttccgtgacagaatgtcatcaattttgccaatcgatttcgctagcaa
ctgggaaaggtacgccagtacatttgatttcgctgtttccttctcatcaattgaacactc
tgggttgggaagatacggggacccgattgatccgatcggcgatatcagagaaatgctcaa
aatcaaatgtgtcttgaaaccaggaggcctcctgttcatcggcttcccacttggcactga
cgcgcttccatacaatgctcatagaatttacggatcggtccgtttggcaatgatgtttgc
tggctttgaatggatcgacacatttactggtgaatcggaacaaccacttgatctcacgtc
ggaacgacttcacgctaaaccacttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGCTGGGAGGCCAAGCCTAC 586 517 480 Antisense
TGAAGGATTGTCTGTCTATCACGCC 475 575 510 Antisense
GCAATCACACCGTCTGGATGGGATG 202 323 537 Antisense
TGCAGCCGTGGGTTGAAGTCTCAGC 695 577 584 Antisense
AAGTCTCAGCTCTTGTCAATGGGGC 446 157 599 Antisense
GTACGCCAGTACATTTGATTTCGCT 588 457 729 Antisense
GCTGTTTCCTTCTCATCAATTGAAC 157 295 751 Antisense
CGCGCTTCCATACAATGCTCATAGA 686 255 900 Antisense
GGATCGGTCCGTTTGGCAATGATGT 50 513 931 Antisense
TCGGAACAACCACTTGATCTCACGT 248 607 994 Antisense
CGACTTCACGCTAAACCACTTTTCG 633 249 1024 Antisense
Sequence Source Affymetrix Proprietary Database