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[180879_at]

Description C45G3.2A /REP_DB=WormBase Gene ID /WP=CE15711 /TR=O17668 /GB=CAB07176.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 01      6grp_total > 32      4grp_total > 53      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 151.6
(3)
P 		123.5
(1.2)
P 		114.8
(0.6)
P 		57.9
(-3)
A 		94
B 146.4
(3)
P 		84.9
(-2)
P 		95.6
(-1.1)
P 		72.6
(-3)
A 		74
C 178.9
(3)
P 		139.2
(0.7)
P 		130.1
(0.2)
P 		74.9
(-3)
A 		104
avr 159
(3) 		115.9
(0.1) 		113.5
(-0) 		68.5
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 40.1
(-3)
A 		234.8
(3)
P 		171.9
(1.1)
P 		126.3
(-0.3)
P 		69.6
(-2.1)
A 		70.4
(-2.1)
P 		195
B 146.9
(3)
P 		67.8
(-1.1)
P 		135.3
(2.4)
P 		95.2
(0.3)
P 		77.2
(-0.6)
P 		32.2
(-3)
A 		115
C 199
(3)
P 		96.5
(-1.1)
P 		119.4
(-0.2)
P 		107.4
(-0.7)
P 		117.8
(-0.3)
P 		49.3
(-3)
A 		150
avr 128.7
(2.1) 		133
(2.4) 		142.2
(3) 		109.6
(0.9) 		88.2
(-0.5) 		50.6
(-3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 55.2
(3)
P 		26.8
(-0.6)
P 		30
(-0.2)
P 		8.5
(-3)
A 		47
B 46.7
(3)
P 		21
(-1.9)
P 		22.2
(-1.7)
P 		15.5
(-3)
A 		31
C 59.2
(3)
P 		40
(0.5)
P 		45.3
(1.2)
P 		12.6
(-3)
A 		47
avr 53.7
(3) 		29.3
(-0.5) 		32.5
(-0.1) 		12.2
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 7.4
(-3)
A 		83.5
(3)
P 		37.4
(-0.6)
P 		32
(-1.1)
P 		21
(-1.9)
A 		17.1
(-2.2)
P 		76
B 51.1
(3)
P 		22.6
(-1.4)
P 		32.8
(0.2)
P 		25.2
(-1)
P 		31.4
(-0)
P 		12
(-3)
A 		39
C 73.8
(3)
P 		29.5
(-1.6)
P 		30.4
(-1.5)
P 		21.6
(-2.5)
P 		38.1
(-0.7)
P 		16.5
(-3)
A 		57
avr 44.1
(2.8) 		45.2
(3) 		33.5
(0.7) 		26.3
(-0.8) 		30.2
(-0) 		15.2
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1365
Sequence Type Exemplar sequence
Representative Public ID C45G3.2A NCBI
Target Description C45G3.2A /REP_DB=WormBase Gene ID /WP=CE15711 /TR=O17668 /GB=CAB07176.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026239(11), NM_001026236(11), NM_001030056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026239 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001026236 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
NM_001030056 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
F25H5.1f ENSEMBL cdna:known chromosome:CEL140:I:9189942:9218461:-1 gene:F25H5.1 11/11 None
F25H5.1a ENSEMBL cdna:known chromosome:CEL140:I:9191197:9218461:-1 gene:F25H5.1 11/11 None
F25H5.1c.2 ENSEMBL cdna:known chromosome:CEL140:I:9191197:9218463:-1 gene:F25H5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024114 6/11 Cross Hyb Matching Probes None
SNAP00000024097 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024113 4/11 Cross Hyb Matching Probes None
SNAP00000024098 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565712 6 3 NM_001026236 180879_at (11), 181484_s_at (11)
NM_001026239 174855_at (11), 180879_at (11), 181484_s_at (11), 193324_at (11)
NM_001030056 180879_at (11), 181484_s_at (11)
NM_001030057 181483_at (11), 181484_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9202407-9218392(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAJ30229 Hypothetical protein F25H5.1f [Caenorhabditis elegans] emb|CAI46551.1| Hypothetical protein F25H5.1f [Caenorhabditis elegans] ref|NP_001021410.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAB02980 Hypothetical protein F25H5.1a [Caenorhabditis elegans] emb|CAI46552.1| Hypothetical protein F25H5.1a [Caenorhabditis elegans] ref|NP_001025227.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30228 Hypothetical protein F25H5.1c [Caenorhabditis elegans] emb|CAI46550.1| Hypothetical protein F25H5.1c [Caenorhabditis elegans] ref|NP_001021407.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-10
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Sequence
Target Sequence 
>C. ELEGANS:180879_AT
gatgatccagagtactcgtcgtatggaaatgaaaacgaaaagccggaaaatgaggaagaa
ggagcatttgttgagtatgagaaacttgataaaactgaagatccagctgcattcaaggtt
tgccaagcaacaactgccgtaaacagaacttacaacaacattcgtccatcttacagaatg
ccaatcggcggaggcagtggctcatcgagtggctcaatctctcgtgaaattcgaattgag
tcgatgaacttaacggatgttgaagatggagcaaggtgtcgggataaggaatgtcatctt
ggatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATCCAGAGTACTCGTCGTATG 258 411 112 Antisense
CCAGCTGCATTCAAGGTTTGCCAAG 95 273 214 Antisense
GTTTGCCAAGCAACAACTGCCGTAA 270 451 229 Antisense
ACAACAACATTCGTCCATCTTACAG 706 111 263 Antisense
CCATCTTACAGAATGCCAATCGGCG 378 271 277 Antisense
CCAATCGGCGGAGGCAGTGGCTCAT 109 271 292 Antisense
GCTCATCGAGTGGCTCAATCTCTCG 483 301 311 Antisense
GTGGCTCAATCTCTCGTGAAATTCG 255 491 320 Antisense
GAGTCGATGAACTTAACGGATGTTG 243 399 349 Antisense
GATGGAGCAAGGTGTCGGGATAAGG 123 405 376 Antisense
GGATAAGGAATGTCATCTTGGATGG 355 509 393 Antisense
Sequence Source Affymetrix Proprietary Database