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[180878_at]

Description F02C12.4 /REP_DB=WormBase Gene ID /WP=CE03134 /TR=Q19110 /GB=CAA91021.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 30.4
(-1.6)
A 		33.9
(-1.4)
A 		7.6
(-3)
A 		108.7
(3)
A 		101
B 42.1
(-0.8)
A 		34
(-1.3)
A 		8
(-3)
A 		102.4
(3)
P 		94
C 57.8
(-1.3)
A 		29
(-2.3)
A 		7.5
(-3)
A 		189.2
(3)
P 		182
avr 43.4
(-1.3) 		32.3
(-1.8) 		7.7
(-3) 		133.4
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 66.8
(3)
A 		4.8
(-3)
A 		53.9
(1.8)
A 		9.2
(-2.6)
A 		8
(-2.7)
A 		31.5
(-0.4)
A 		62
B 52.9
(2.6)
A 		56
(3)
A 		54.8
(2.8)
A 		51.7
(2.4)
A 		9.3
(-3)
A 		29.5
(-0.4)
A 		47
C 4.7
(-3)
A 		50.8
(3)
A 		8.7
(-2.5)
A 		11
(-2.2)
A 		8.2
(-2.5)
A 		33.8
(0.8)
A 		46
avr 41.5
(3) 		37.2
(2.2) 		39.1
(2.6) 		24
(-0.2) 		8.5
(-3) 		31.6
(1.2) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 11.1
(0.9)
A 		7.4
(-0.7)
A 		2
(-3)
A 		15.9
(3)
A 		14
B 13.4
(0.5)
A 		8.4
(-1)
A 		1.9
(-3)
A 		21.8
(3)
P 		20
C 19.1
(0.4)
A 		8.3
(-1.8)
A 		2.6
(-3)
A 		31.9
(3)
P 		29
avr 14.5
(0.5) 		8
(-1.3) 		2.2
(-3) 		23.2
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 12.3
(3)
A 		1.7
(-3)
A 		11.7
(2.7)
A 		2.3
(-2.7)
A 		2.4
(-2.6)
A 		7.7
(0.4)
A 		11
B 18.4
(2.9)
A 		18.6
(3)
A 		13.3
(0.9)
A 		13.7
(1)
A 		3.8
(-3)
A 		11
(-0.1)
A 		15
C 1.8
(-3)
A 		15.5
(3)
A 		2.2
(-2.8)
A 		2.2
(-2.8)
A 		2.7
(-2.6)
A 		11.3
(1.2)
A 		14
avr 10.8
(2.3) 		11.9
(3) 		9.1
(1.1) 		6.1
(-0.9) 		3
(-3) 		10
(1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17757
Sequence Type Exemplar sequence
Representative Public ID F02C12.4 NCBI
Target Description F02C12.4 /REP_DB=WormBase Gene ID /WP=CE03134 /TR=Q19110 /GB=CAA91021.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077826 NCBI Caenorhabditis elegans F02C12.4 (F02C12.4) mRNA, complete cds. 11/11 None
GENEFINDER00000017016 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13389705:13394992:-1 11/11 None
F02C12.4 ENSEMBL cdna:known chromosome:CEL140:X:13391870:13394992:-1 gene:F02C12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017009 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13391869-13394992(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02C12.4
Entrez Gene 184077 Entrez gene
SwissProt Q19110 EMBL-EBI
WormBase CE03134 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91021 Hypothetical protein F02C12.4 [Caenorhabditis elegans] ref|NP_510227.1| F02C12.4 [Caenorhabditis elegans] 1.0E-177
blast CAA91021 Hypothetical protein F02C12.4 [Caenorhabditis elegans] ref|NP_510227.1| F02C12.4 [Caenorhabditis elegans] 1.0E-174
blast CAE63375 Hypothetical protein CBG07788 [Caenorhabditis briggsae] 1.0E-124
blast CAE69715 Hypothetical protein CBG15986 [Caenorhabditis briggsae] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-24
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 8.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510227.1 1 7-24
F02C12.4 1 7-24
GENEFINDER00000017016 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:180878_AT
ggtttccaacaattctgctctagagcgcctaggcatgccagttctcagagtaaatcgtct
aggcctcacgttcaaccccaaattatgcataactactgaggaatcgtcgagatacacaaa
tgtgcaaaggggagccgctgataattttacagcttgtcagggtagagcgggagttttaaa
agaatgcagctctactccgaacggggtaaatggtggcctaccggatgattgcgagctcat
aactggaaatttatatgtggacggagccagcaatgccaacattacaacaaaactgcaata
cgtgaaagaagtctacggaagagtgtacattagatccacaacactgtccaacctgacgat
tccgcttttggaaaaagtttatgcatcagagccaactgcgtctacaaccctggatccaac
catcaacgtggcaagcaacatgaatttcaccaaactctcagtgccaaagatcaacttcat
ggcgaagaacgacttatcatttttgacttccgacgcttcatatgtaatggatcaagatct
ttgcaatcagttgtctcctttcggtaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTCCAACAATTCTGCTCTAGAG 37 507 333 Antisense
CTAGAGCGCCTAGGCATGCCAGTTC 93 225 352 Antisense
TAAATCGTCTAGGCCTCACGTTCAA 516 641 383 Antisense
TGCAGCTCTACTCCGAACGGGGTAA 458 543 517 Antisense
TGGCCTACCGGATGATTGCGAGCTC 546 543 546 Antisense
ATTAGATCCACAACACTGTCCAACC 294 11 661 Antisense
TCCAACCTGACGATTCCGCTTTTGG 548 315 679 Antisense
GGATCCAACCATCAACGTGGCAAGC 163 513 744 Antisense
GAATTTCACCAAACTCTCAGTGCCA 105 325 774 Antisense
GACTTCCGACGCTTCATATGTAATG 580 371 837 Antisense
CAATCAGTTGTCTCCTTTCGGTAAT 590 179 876 Antisense
Sequence Source Affymetrix Proprietary Database