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[180877_s_at]

Description F53G2.4 /REP_DB=WormBase Gene ID /WP=CE10996 /TR=O17242 /GB=AAB71014.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 19      6grp_cgc > 31      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 62.8
(-3)
P 		120.6
(-1)
A 		62.7
(-3)
A 		240.4
(3)
P 		178
B 72.2
(-3)
P 		117.2
(-0.6)
M 		79.3
(-2.6)
A 		182.7
(3)
P 		111
C 117.3
(-0.3)
P 		110.4
(-0.8)
P 		81.5
(-3)
M 		161.1
(3)
P 		80
avr 84.1
(-2.5) 		116.1
(-0.9) 		74.5
(-3) 		194.7
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 17.7
(-3)
A 		56.6
(1.8)
M 		58.6
(2.1)
A 		66.2
(3)
A 		61.3
(2.4)
A 		31.1
(-1.3)
A 		49
B 78.2
(3)
A 		65.2
(1.3)
A 		59.4
(0.6)
A 		31.2
(-3)
A 		43.1
(-1.5)
A 		41.1
(-1.7)
A 		47
C 89.3
(3)
P 		41.2
(-2.5)
A 		37.2
(-3)
A 		45.5
(-2)
A 		39.2
(-2.8)
A 		45.8
(-2)
A 		52
avr 61.7
(3) 		54.3
(1) 		51.7
(0.3) 		47.6
(-0.8) 		47.9
(-0.7) 		39.3
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.9
(-0.9)
P 		26.2
(0.1)
A 		16.4
(-3)
A 		35.2
(3)
P 		19
B 23
(-1.7)
P 		28.9
(0.1)
M 		18.4
(-3)
A 		38.9
(3)
P 		21
C 38.8
(3)
P 		31.7
(-0.7)
P 		28.4
(-2.4)
M 		27.2
(-3)
P 		12
avr 28.2
(0.4) 		28.9
(0.7) 		21.1
(-3) 		33.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.3
(-3)
A 		20.1
(3)
M 		12.8
(0.4)
A 		16.8
(1.8)
A 		18.5
(2.4)
A 		7.6
(-1.5)
A 		17
B 27.2
(3)
A 		21.7
(1.3)
A 		14.4
(-1.1)
A 		8.3
(-3)
A 		17.5
(-0.1)
A 		15.3
(-0.8)
A 		19
C 33.1
(3)
P 		12.6
(-2.1)
A 		9.5
(-2.9)
A 		9.2
(-3)
A 		12.7
(-2.1)
A 		15.3
(-1.5)
A 		24
avr 21.2
(3) 		18.1
(1.1) 		12.2
(-2.5) 		11.4
(-3) 		16.2
(-0.1) 		12.7
(-2.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180877_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5403
Sequence Type Exemplar sequence
Representative Public ID F53G2.4 NCBI
Target Description F53G2.4 /REP_DB=WormBase Gene ID /WP=CE10996 /TR=O17242 /GB=AAB71014.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061877, NM_061876
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030755 ENSEMBL cdna:SNAP chromosome:CEL140:II:2453062:2454992:-1 None
NM_061876 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) (pqn-42) mRNA, complete cds. A 
GENEFINDER00000030759 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2453296:2458973:-1 None
F53G2.4a ENSEMBL cdna:known chromosome:CEL140:II:2452989:2458982:-1 gene:F53G2.4 None
NM_061877 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) (pqn-42) mRNA, complete cds. A 
F53G2.4b ENSEMBL cdna:known chromosome:CEL140:II:2453053:2460188:-1 gene:F53G2.4 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2453060-2454718(-) 100.0 100.0
Public Domain and Genome References
Ensembl F53G2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84804 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform a [Caenorhabditis elegans] ref|NP_494278.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 0.0
blast AAN84805 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform b [Caenorhabditis elegans] ref|NP_494277.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 0.0
blast AAN84805 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform b [Caenorhabditis elegans] ref|NP_494277.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 1.0E-135
blast AAN84804 Prion-like-(q/n-rich)-domain-bearing protein protein 42, isoform a [Caenorhabditis elegans] ref|NP_494278.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-42) [Caenorhabditis elegans] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:180877_S_AT
taaccgacgtgtgcattcccggaaaatgctccaacagtacgacacagctgtgctgtttcc
agaagtttttgcaggtgagcggggatttttcgccaaagttgaggcttttgaggctgcttt
cagccattttcagactgcgtttgggccactttaggccaaagttaaggcttttaaggctgc
ttaagtcactctcagacagcttcctaagacaatttcagactgcttttgggccacttggag
ccaaagccaaatactcgtgctgcaacgacccaacccaagacgagggtgctccaaagctaa
ccaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCGACGTGTGCATTCCCGGAAA 308 637 323 Antisense
ATGCTCCAACAGTACGACACAGCTG 673 41 348 Antisense
ACAGCTGTGCTGTTTCCAGAAGTTT 464 109 366 Antisense
GGTGAGCGGGGATTTTTCGCCAAAG 277 493 396 Antisense
TGAGGCTTTTGAGGCTGCTTTCAGC 404 567 422 Antisense
ATTTTCAGACTGCGTTTGGGCCACT 224 13 448 Antisense
AAGGCTGCTTAAGTCACTCTCAGAC 528 161 495 Antisense
TCAGACTGCTTTTGGGCCACTTGGA 131 601 537 Antisense
CAAATACTCGTGCTGCAACGACCCA 520 191 570 Antisense
GACCCAACCCAAGACGAGGGTGCTC 28 381 589 Antisense
GAGGGTGCTCCAAAGCTAACCAACA 131 403 604 Antisense
Sequence Source Affymetrix Proprietary Database