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[180876_at]

Description R04D3.10 /REP_DB=WormBase Gene ID /WP=CE06230 /TR=Q20482 /GB=CAA90548.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 43      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 7.6
(-3)
A 		44
(3)
A 		11.4
(-2.4)
A 		13.4
(-2)
A 		36
B 31.1
(1)
A 		43.9
(3)
A 		25.5
(0.1)
A 		6.4
(-3)
A 		38
C 27.2
(-2.8)
A 		56.6
(3)
A 		26.1
(-3)
A 		51.5
(2)
A 		31
avr 22
(-2.8) 		48.2
(3) 		21
(-3) 		23.8
(-2.4) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 18.7
(-1.3)
A 		36.6
(0.9)
A 		43.3
(1.7)
A 		41.8
(1.5)
A 		53.9
(3)
A 		5.3
(-3)
A 		49
B 9.1
(-2.5)
A 		7.7
(-3)
A 		25.2
(3)
A 		19.1
(0.9)
A 		22.5
(2.1)
A 		9.8
(-2.3)
A 		18
C 7.3
(-2.3)
A 		20.1
(0.7)
A 		5.5
(-2.7)
A 		28.8
(2.8)
A 		29.6
(3)
A 		4.3
(-3)
A 		25
avr 11.7
(-1.9) 		21.5
(0.1) 		24.7
(0.8) 		29.9
(1.9) 		35.3
(3) 		6.5
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.8
(-2.4)
A 		9.6
(3)
A 		3
(-2.2)
A 		2
(-3)
A 		8
B 9.9
(2.4)
A 		10.8
(3)
A 		5.9
(-0.1)
A 		1.4
(-3)
A 		9
C 9
(-2.8)
A 		16.3
(3)
A 		9.1
(-2.7)
A 		8.7
(-3)
A 		8
avr 7.2
(-0.7) 		12.2
(3) 		6
(-1.5) 		4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.4
(-2.2)
A 		13
(1.7)
A 		9.4
(0.2)
A 		10.6
(0.7)
A 		16.3
(3)
A 		1.3
(-3)
A 		15
B 3.2
(-2.5)
A 		2.6
(-3)
A 		6.1
(0.2)
A 		5
(-0.8)
A 		9.2
(3)
A 		3.6
(-2.1)
A 		7
C 2.7
(-2)
A 		6.1
(0.4)
A 		1.4
(-3)
A 		5.8
(0.2)
A 		9.6
(3)
A 		1.5
(-2.9)
A 		8
avr 3.1
(-2.4) 		7.2
(0.2) 		5.6
(-0.8) 		7.1
(0.1) 		11.7
(3) 		2.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17376
Sequence Type Exemplar sequence
Representative Public ID R04D3.10 NCBI
Target Description R04D3.10 /REP_DB=WormBase Gene ID /WP=CE06230 /TR=Q20482 /GB=CAA90548.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077815(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077815 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-8) (srxa-8) mRNA, complete cds. 10/11 None
R04D3.10 ENSEMBL cdna:known chromosome:CEL140:X:13307202:13308765:-1 gene:R04D3.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014118 7/11 Cross Hyb Matching Probes None
SNAP00000014113 7/11 Cross Hyb Matching Probes None
SNAP00000042661 3/11 Cross Hyb Matching Probes None
GENEFINDER00000042671 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13307201-13308765(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-8
Ensembl R04D3.10
Entrez Gene 187578 Entrez gene
SwissProt Q20482 EMBL-EBI
WormBase CE38209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94169 Hypothetical protein R04D3.10 [Caenorhabditis elegans] emb|CAA90548.2| Hypothetical protein R04D3.10 [Caenorhabditis elegans] ref|NP_510216.2| Serpentine Receptor, class XA family member (srxa-8) [Caenorhabditis elegans] 1.0E-167
blast CAA94169 Hypothetical protein R04D3.10 [Caenorhabditis elegans] emb|CAA90548.2| Hypothetical protein R04D3.10 [Caenorhabditis elegans] ref|NP_510216.2| Serpentine Receptor, class XA family member (srxa-8) [Caenorhabditis elegans] 1.0E-164
blast CAB01906 Hypothetical protein ZK678.4 [Caenorhabditis elegans] ref|NP_510592.2| Serpentine Receptor, class XA family member (srxa-9) [Caenorhabditis elegans] 4.0E-77
blast CAB01906 Hypothetical protein ZK678.4 [Caenorhabditis elegans] ref|NP_510592.2| Serpentine Receptor, class XA family member (srxa-9) [Caenorhabditis elegans] 4.0E-72
blast CAE63362 Hypothetical protein CBG07770 [Caenorhabditis briggsae] 1.0E-70
blast CAE63362 Hypothetical protein CBG07770 [Caenorhabditis briggsae] 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 8.3E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510216.2 7 5-27,39-68,88-110,123-145,175-197,234-256,266-284
R04D3.10 7 5-27,39-68,88-110,123-145,175-197,247-269,279-297
Sequence
Target Sequence 
>C. ELEGANS:180876_AT
gtgctcatatcattacttattccatactttacaccgtgtcgtattattttcatgttgaat
catttgtcatttatatctgcgtgtgacccagaacgacatccgatcacagttttccaaaac
caatatgctattctacttccatttacatgtatgtttgtcaacttggctattatcttgcat
ctgcgtttcgcacggaatgacacatacgtaaaatttaaaaagttctttaccaaaaatcat
cacatcagcgccgttccaactgtcaaggctgcagaacagagcaacttgtcgaaaattcaa
gctcgcagagacctgatcatgatgaggcaaacagtggcaattgctgtttatttgtctatt
tatgaacttggagcgtttatcacaaaatgttttccgactgttttcgctagtttacctgaa
gttgtgagagaaggatacttttacttccgcttggagtcgattccgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTCATATCATTACTTATTCCAT 575 479 412 Antisense
TATTCCATACTTTACACCGTGTCGT 627 663 429 Antisense
ATATCTGCGTGTGACCCAGAACGAC 530 19 484 Antisense
GAACGACATCCGATCACAGTTTTCC 665 345 502 Antisense
AACTTGGCTATTATCTTGCATCTGC 588 137 571 Antisense
CTTGCATCTGCGTTTCGCACGGAAT 213 219 585 Antisense
CAAAAATCATCACATCAGCGCCGTT 297 191 642 Antisense
CAAGCTCGCAGAGACCTGATCATGA 484 185 709 Antisense
ATGTTTTCCGACTGTTTTCGCTAGT 690 45 798 Antisense
GAAGGATACTTTTACTTCCGCTTGG 263 335 841 Antisense
TTCCGCTTGGAGTCGATTCCGATGA 623 697 856 Antisense
Sequence Source Affymetrix Proprietary Database