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[180875_at]

Description F37E3.3 /REP_DB=WormBase Gene ID /WP=CE09999 /TR=O01765 /GB=AAB54135.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 89
(2.7)
A 		90.5
(3)
A 		59.6
(-3)
A 		88.8
(2.7)
A 		31
B 9.3
(-3)
A 		65.9
(0.3)
A 		73.6
(0.7)
A 		112.7
(3)
A 		103
C 59.3
(2.5)
A 		32.3
(-0.4)
A 		8.5
(-3)
A 		63.6
(3)
A 		55
avr 52.5
(-2.2) 		62.9
(-0.7) 		47.2
(-3) 		88.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 6.3
(-3)
A 		8.6
(-2.9)
A 		12.3
(-2.8)
A 		96.9
(0.5)
A 		93.4
(0.4)
A 		160.5
(3)
P 		154
B 45
(-1.8)
A 		15.1
(-3)
A 		19.5
(-2.8)
A 		19.4
(-2.8)
A 		152.8
(2.5)
P 		165
(3)
P 		150
C 54.6
(-1.6)
A 		20.1
(-2.6)
A 		45.4
(-1.9)
A 		6.2
(-3)
A 		104.6
(-0.3)
P 		221
(3)
P 		215
avr 35.3
(-2.3) 		14.6
(-3) 		25.7
(-2.6) 		40.8
(-2.1) 		116.9
(0.7) 		182.2
(3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 32.4
(3)
A 		19.7
(-0.9)
A 		15.6
(-2.2)
A 		13
(-3)
A 		19
B 3
(-3)
A 		16.3
(0.8)
A 		17.1
(1)
A 		24
(3)
A 		21
C 19.6
(3)
A 		9.3
(-0.7)
A 		3
(-3)
A 		10.7
(-0.2)
A 		17
avr 18.3
(3) 		15.1
(-0) 		11.9
(-3) 		15.9
(0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 1.2
(-3)
A 		3.1
(-2.7)
A 		2.7
(-2.8)
A 		24.6
(0.7)
A 		28.2
(1.3)
A 		39.1
(3)
P 		38
B 15.7
(-1.9)
A 		5
(-3)
A 		4.7
(-3)
A 		5.1
(-3)
A 		62.1
(3)
P 		61.5
(2.9)
P 		57
C 20.2
(-1.4)
A 		6.1
(-2.6)
A 		11.6
(-2.1)
A 		1.2
(-3)
A 		33.8
(-0.3)
P 		74
(3)
P 		73
avr 12.4
(-2.1) 		4.7
(-3) 		6.3
(-2.8) 		10.3
(-2.4) 		41.4
(1.1) 		58.2
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180875_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2116
Sequence Type Exemplar sequence
Representative Public ID F37E3.3 NCBI
Target Description F37E3.3 /REP_DB=WormBase Gene ID /WP=CE09999 /TR=O01765 /GB=AAB54135.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059451 NCBI Caenorhabditis elegans F37E3.3 (F37E3.3) mRNA, complete cds. 11/11 None
SNAP00000006895 ENSEMBL cdna:SNAP chromosome:CEL140:I:6437743:6439660:-1 11/11 None
GENEFINDER00000006898 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6437743:6439660:-1 11/11 None
F37E3.3 ENSEMBL cdna:known chromosome:CEL140:I:6437743:6439660:-1 gene:F37E3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6437671-6439589(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37E3.3
Entrez Gene 185428 Entrez gene
SwissProt O01765 EMBL-EBI
WormBase CE09999 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54135 Hypothetical protein F37E3.3 [Caenorhabditis elegans] ref|NP_491852.1| F37E3.3 [Caenorhabditis elegans] 0.0
blast CAE67190 Hypothetical protein CBG12626 [Caenorhabditis briggsae] 2.0E-90
Sequence
Target Sequence 
>C. ELEGANS:180875_AT
caattggagctattctcaacccaccaacattgatttatgagcatcaagaaaatcaagttg
gatgttcattgaaagatttcttgaagaactttgatactcatttggatttggcacaaagaa
tcaagttgtgctctgctgctgtccgtatcttatcggagcttcatcgttttgatatctatc
atggagcttcaaaagtggataacttttatgttttgggctacaaaaatgaaaaaacaatga
actatgagttggtgttcaatggtgctagcggattgctctatgaaggaaaatcggataaca
ctgtgacaatggttgattatgattcgaatgctccagaagttgccttcactcgtaaacttt
caaaggaaagcggcgttttcactttgggacgtctcttcgagcaaattctcgagtctgaaa
ttctcaagtcttacagtgagccaccacaagaagagcctcgtgttctgaatgacatgcgtc
gcttgattggccgtgccacacgtgcaaatccttcgcaaagaccaaccatgaatgggattg
tcatgctgattcgggagcttctcatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTGGAGCTATTCTCAACCCACC 391 179 644 Antisense
GCTGCTGTCCGTATCTTATCGGAGC 268 297 778 Antisense
GTTGGTGTTCAATGGTGCTAGCGGA 268 437 891 Antisense
TCGAATGCTCCAGAAGTTGCCTTCA 163 599 967 Antisense
GTTGCCTTCACTCGTAAACTTTCAA 360 439 982 Antisense
GGGACGTCTCTTCGAGCAAATTCTC 416 495 1029 Antisense
AAGTCTTACAGTGAGCCACCACAAG 472 157 1069 Antisense
GAGCCTCGTGTTCTGAATGACATGC 366 385 1096 Antisense
TGACATGCGTCGCTTGATTGGCCGT 331 571 1113 Antisense
CCACACGTGCAAATCCTTCGCAAAG 660 275 1139 Antisense
TGCTGATTCGGGAGCTTCTCATGGC 379 581 1187 Antisense
Sequence Source Affymetrix Proprietary Database