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[180874_at]

Description C04C11.1 /REP_DB=WormBase Gene ID /WP=CE05209 /TR=Q17625 /GB=CAA96583.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 103.3
(2.4)
P 		88.6
(0.9)
A 		51.2
(-3)
A 		109.4
(3)
A 		58
B 92.7
(3)
P 		58.1
(0.4)
A 		25.8
(-2)
A 		13.2
(-3)
A 		80
C 73.7
(2.1)
P 		80.9
(2.8)
A 		22.1
(-3)
A 		83.1
(3)
A 		61
avr 89.9
(3) 		75.9
(1.5) 		33
(-3) 		68.6
(0.8) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 140.7
(3)
P 		91.2
(0.7)
M 		39.2
(-1.7)
A 		12.3
(-3)
A 		67.5
(-0.4)
P 		12
(-3)
A 		129
B 102.2
(3)
P 		59.5
(-1)
P 		58.7
(-1.1)
A 		37.9
(-3)
A 		77.3
(0.7)
P 		53.1
(-1.6)
P 		64
C 61.3
(-0.8)
P 		117
(3)
P 		93.1
(1.4)
P 		28.6
(-3)
A 		59.5
(-0.9)
A 		36.9
(-2.4)
A 		88
avr 101.4
(3) 		89.2
(2) 		63.7
(-0) 		26.3
(-3) 		68.1
(0.3) 		34
(-2.4) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 37.6
(3)
P 		19.2
(-1.6)
A 		13.4
(-3)
A 		16
(-2.4)
A 		24
B 29.6
(3)
P 		14.4
(-0.4)
A 		6
(-2.3)
A 		2.8
(-3)
A 		27
C 24.4
(3)
P 		23.2
(2.6)
A 		7.7
(-3)
A 		14
(-0.7)
A 		17
avr 30.5
(3) 		18.9
(-0.2) 		9
(-3) 		10.9
(-2.5) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 25.9
(1.7)
P 		32.4
(3)
M 		8.5
(-1.9)
A 		3.1
(-3)
A 		20.4
(0.6)
P 		2.9
(-3)
A 		30
B 35.6
(3)
P 		19.8
(-0.7)
P 		14.3
(-2)
A 		10
(-3)
A 		31.4
(2)
P 		19.8
(-0.7)
P 		26
C 22.7
(0.4)
P 		35.7
(3)
P 		23.7
(0.6)
P 		5.8
(-3)
A 		19.2
(-0.3)
A 		12.4
(-1.7)
A 		30
avr 28.1
(2.7) 		29.3
(3) 		15.5
(-0.6) 		6.3
(-3) 		23.7
(1.5) 		11.7
(-1.6) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17713
Sequence Type Exemplar sequence
Representative Public ID C04C11.1 NCBI
Target Description C04C11.1 /REP_DB=WormBase Gene ID /WP=CE05209 /TR=Q17625 /GB=CAA96583.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029184(11), NR_002412(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029184 NCBI Caenorhabditis elegans C04C11.1a (C04C11.1) mRNA, complete cds. 11/11 None
NR_002412 NCBI Caenorhabditis elegans C04C11.1, miscRNA. 10/11 None
SNAP00000006297 ENSEMBL cdna:SNAP chromosome:CEL140:X:14020519:14022244:1 9/11 None
GENEFINDER00000006310 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14020706:14022244:1 11/11 None
C04C11.1a ENSEMBL cdna:known chromosome:CEL140:X:14020706:14022329:1 gene:C04C11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14020705-14022244(+) 100.0 100.0
Public Domain and Genome References
Ensembl C04C11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96583 Hypothetical protein C04C11.1a [Caenorhabditis elegans] ref|NP_001024355.1| C04C11.1a [Caenorhabditis elegans] 1.0E-154
blast CAA96583 Hypothetical protein C04C11.1a [Caenorhabditis elegans] ref|NP_001024355.1| C04C11.1a [Caenorhabditis elegans] 1.0E-142
blast CAE66440 Hypothetical protein CBG11712 [Caenorhabditis briggsae] 1.0E-111
blast CAE66440 Hypothetical protein CBG11712 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 9.4E-6
Sequence
Target Sequence 
>C. ELEGANS:180874_AT
aaagattctcatcagcaccatcatcaagttcctgctgcaccatatcctgctggaactctt
cctcccagctctcagcgagtggaatggagagagccactagactgtcttattgatagaatg
aacagaatcagaagtacaattgcttgccctccattggaaccatcggtccggttagctgat
attgctgcccagtgggctcggatgttggcgatcagaggggaatttcgaagtgaccgcaac
cgatgtatgaacatctggatggggtctcgtgtaaccgagtcaattgccgacatatggtgg
gatgaagcggaagaatatggtacctggaactatctcgacgttcaatcactttcgtgggtt
ggcgtggccagtgcttttagtgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGATTCTCATCAGCACCATCATC 324 123 373 Antisense
CTCCCAGCTCTCAGCGAGTGGAATG 39 235 434 Antisense
GAGAGAGCCACTAGACTGTCTTATT 376 395 459 Antisense
TGGAACCATCGGTCCGGTTAGCTGA 107 547 527 Antisense
GTTAGCTGATATTGCTGCCCAGTGG 637 445 543 Antisense
GTGGGCTCGGATGTTGGCGATCAGA 243 489 564 Antisense
GGGAATTTCGAAGTGACCGCAACCG 701 493 590 Antisense
GAACATCTGGATGGGGTCTCGTGTA 319 351 621 Antisense
ATGGTACCTGGAACTATCTCGACGT 529 49 689 Antisense
ATCTCGACGTTCAATCACTTTCGTG 399 33 704 Antisense
GGCGTGGCCAGTGCTTTTAGTGAAC 706 515 733 Antisense
Sequence Source Affymetrix Proprietary Database