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[180873_at]

Description F20E11.7 /REP_DB=WormBase Gene ID /WP=CE18616 /TR=Q9XV87 /GB=CAB04138.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 9.4
(-3)
A 		44.6
(3)
A 		42
(2.6)
A 		39.5
(2.1)
A 		35
B 35.5
(0.5)
A 		17.9
(-3)
A 		22.2
(-2.1)
A 		48.1
(3)
P 		30
C 9.9
(-2)
A 		42.5
(3)
A 		3.7
(-3)
A 		38.3
(2.4)
A 		39
avr 18.3
(-3) 		35
(1.2) 		22.6
(-1.9) 		42
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 4.9
(-2.3)
A 		1.7
(-2.9)
A 		14.9
(-0.4)
A 		33
(3)
A 		1.2
(-3)
A 		26
(1.7)
A 		32
B 2
(-3)
A 		9
(-2.3)
A 		18.2
(-1.3)
A 		58.5
(3)
A 		29.4
(-0.1)
A 		25.5
(-0.5)
A 		57
C 17.1
(-0.2)
A 		33.8
(3)
A 		9.6
(-1.7)
A 		15
(-0.6)
A 		15.4
(-0.5)
A 		2.6
(-3)
A 		31
avr 8
(-3) 		14.8
(-1.5) 		14.2
(-1.6) 		35.5
(3) 		15.3
(-1.4) 		18
(-0.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.4
(-3)
A 		9.7
(2)
A 		11
(3)
A 		5.8
(-1.1)
A 		8
B 11.3
(3)
A 		4.4
(-3)
A 		5.2
(-2.3)
A 		10.3
(2.1)
P 		7
C 3.3
(-1.9)
A 		12.2
(3)
A 		1.3
(-3)
A 		6.5
(-0.1)
A 		11
avr 6
(-2.6) 		8.8
(3) 		5.8
(-3) 		7.5
(0.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.9
(-2.6)
A 		0.6
(-2.9)
A 		3.2
(-0.9)
A 		8.4
(3)
A 		0.4
(-3)
A 		6.3
(1.4)
A 		8
B 0.7
(-3)
A 		3
(-2.1)
A 		4.4
(-1.5)
A 		15.5
(3)
A 		12
(1.6)
A 		9.5
(0.6)
A 		15
C 6.3
(0.4)
A 		10.3
(3)
A 		2.4
(-2)
A 		3
(-1.7)
A 		5
(-0.4)
A 		0.9
(-3)
A 		9
avr 2.6
(-3) 		4.6
(-1.1) 		3.3
(-2.3) 		9
(3) 		5.8
(-0) 		5.6
(-0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14067
Sequence Type Exemplar sequence
Representative Public ID F20E11.7 NCBI
Target Description F20E11.7 /REP_DB=WormBase Gene ID /WP=CE18616 /TR=Q9XV87 /GB=CAB04138.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075020 NCBI Caenorhabditis elegans F20E11.7 (F20E11.7) mRNA, complete cds. 11/11 None
GENEFINDER00000027634 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17465840:17471138:1 9/11 None
F20E11.7 ENSEMBL cdna:known chromosome:CEL140:V:17467155:17469204:1 gene:F20E11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029105 1/11 Cross Hyb Matching Probes None
SNAP00000011463 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011469 3/11 Cross Hyb Matching Probes None
SNAP00000027631 2/11 Cross Hyb Matching Probes None
SNAP00000027632 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17467154-17469204(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20E11.7
Entrez Gene 184735 Entrez gene
SwissProt Q9XV87 EMBL-EBI
WormBase CE18616 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04138 Hypothetical protein F20E11.7 [Caenorhabditis elegans] ref|NP_507421.1| F20E11.7 [Caenorhabditis elegans] 0.0
blast CAA16424 Hypothetical protein Y68A4A.10a [Caenorhabditis elegans] ref|NP_001024276.1| Y68A4A.10a [Caenorhabditis elegans] 1.0E-174
blast CAA16424 Hypothetical protein Y68A4A.10a [Caenorhabditis elegans] ref|NP_001024276.1| Y68A4A.10a [Caenorhabditis elegans] 1.0E-155
blast CAA16417 Hypothetical protein Y68A4A.5 [Caenorhabditis elegans] ref|NP_507355.1| Y68A4A.5 [Caenorhabditis elegans] 1.0E-110
blast CAA16417 Hypothetical protein Y68A4A.5 [Caenorhabditis elegans] ref|NP_507355.1| Y68A4A.5 [Caenorhabditis elegans] 9.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.7E-54
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 9.6E-41
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.6E-18
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.5E-41
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.7E-54
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 9.6E-41
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.6E-18
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.5E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027634 3 444-466,487-509,524-546
Sequence
Target Sequence 
>C. ELEGANS:180873_AT
gcaaatcgcagagacatctgttacttgtggggacgataaaatttggcaagatccgaatgg
aattcgaggaaacactttgattgcgagcattgcttctgagacctgtcttgaaatgaccgg
gggcgaattatttacttctggcacaggacctggaccaatcgcagagacttctgtcacttg
tggagacgatgttattttgcaagatccgaatggaactcgaggaaacacgttgattgcgag
cattaccgctcagacttgtgtaagctgcatgcaaacttggctgcgtctgaagcgcggtcg
ccttccatgccagacgtgcaccgcatttatggatccaatggttcccgaagccacttgcac
tgtcaccgttggtatgactagcgccggttgcgccacccttgcagtcaaatgtatgataaa
cgctggatttgaatgtaacaacgttgtacttatccttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAATCGCAGAGACATCTGTTACT 536 317 522 Antisense
GACATCTGTTACTTGTGGGGACGAT 91 371 534 Antisense
TGCGAGCATTGCTTCTGAGACCTGT 589 581 603 Antisense
GAGACCTGTCTTGAAATGACCGGGG 269 395 619 Antisense
TTGAAATGACCGGGGGCGAATTATT 475 417 629 Antisense
GACGATGTTATTTTGCAAGATCCGA 316 377 706 Antisense
TTGCGAGCATTACCGCTCAGACTTG 408 703 755 Antisense
AGCTGCATGCAAACTTGGCTGCGTC 201 81 784 Antisense
AACTTGGCTGCGTCTGAAGCGCGGT 614 137 795 Antisense
AACGCTGGATTTGAATGTAACAACG 47 147 940 Antisense
GTAACAACGTTGTACTTATCCTTGA 166 461 956 Antisense
Sequence Source Affymetrix Proprietary Database