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[180872_at]

Description T15D6.10 /REP_DB=WormBase Gene ID /WP=CE13698 /TR=O02317 /GB=CAB05623.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 17      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 4.4
(3)
A 		2.8
(-3)
A 		3.2
(-1.5)
A 		3.8
(0.7)
A 		2
B 2.8
(-3)
A 		29
(3)
A 		4.5
(-2.6)
A 		16.9
(0.2)
A 		26
C 4.9
(-3)
A 		4.3
(-3)
A 		20.3
(-1.9)
A 		90.9
(3)
P 		87
avr 4
(-3) 		12
(-1.6) 		9.3
(-2) 		37.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 46.4
(3)
A 		3.3
(-2.8)
A 		25.9
(0.3)
A 		6.3
(-2.4)
A 		2.1
(-2.9)
A 		1.6
(-3)
A 		45
B 1.8
(-2.9)
A 		10.6
(-1)
A 		4
(-2.4)
A 		28.7
(3)
A 		2.9
(-2.6)
A 		1.3
(-3)
A 		27
C 10.5
(1.2)
A 		1.7
(-3)
A 		14.2
(3)
A 		5
(-1.4)
A 		4.2
(-1.8)
A 		14.3
(3)
A 		13
avr 19.6
(3) 		5.2
(-2.2) 		14.7
(1.2) 		13.3
(0.7) 		3.1
(-3) 		5.7
(-2.1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.6
(3)
A 		0.6
(-3)
A 		0.8
(-1.8)
A 		0.6
(-3)
A 		1
B 0.9
(-3)
A 		7.2
(3)
A 		1
(-2.9)
A 		3.6
(-0.4)
A 		6
C 1.6
(-2.8)
A 		1.2
(-3)
A 		7.1
(-0.5)
A 		15.3
(3)
P 		14
avr 1.4
(-3) 		3
(-1.1) 		3
(-1.1) 		6.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.5
(3)
A 		1.2
(-2.4)
A 		5.6
(0.9)
A 		1.6
(-2.1)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		8
B 0.6
(-2.9)
A 		3.5
(-0.5)
A 		1
(-2.6)
A 		7.6
(3)
A 		1.2
(-2.4)
A 		0.5
(-3)
A 		7
C 3.9
(1.7)
A 		0.5
(-3)
A 		3.6
(1.3)
A 		1
(-2.3)
A 		1.4
(-1.7)
A 		4.8
(3)
A 		4
avr 4.3
(3) 		1.7
(-1.9) 		3.4
(1.3) 		3.4
(1.3) 		1.1
(-3) 		1.9
(-1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1851
Sequence Type Exemplar sequence
Representative Public ID T15D6.10 NCBI
Target Description T15D6.10 /REP_DB=WormBase Gene ID /WP=CE13698 /TR=O02317 /GB=CAB05623.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060740 NCBI Caenorhabditis elegans T15D6.10 (T15D6.10) mRNA, complete cds. 11/11 None
SNAP00000012747 ENSEMBL cdna:SNAP chromosome:CEL140:I:12397881:12404399:1 11/11 None
GENEFINDER00000012751 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12402241:12404399:1 11/11 None
T15D6.10 ENSEMBL cdna:known chromosome:CEL140:I:12402241:12404399:1 gene:T15D6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12402171-12404330(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15D6.10
Entrez Gene 188536 Entrez gene
SwissProt O02317 EMBL-EBI
WormBase CE13698 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05623 Hypothetical protein T15D6.10 [Caenorhabditis elegans] ref|NP_493141.1| T15D6.10 [Caenorhabditis elegans] 0.0
blast AAB94266 Hypothetical protein C14C6.8 [Caenorhabditis elegans] ref|NP_503243.2| C14C6.8 [Caenorhabditis elegans] 0.0
blast CAB05618 Hypothetical protein T15D6.8 [Caenorhabditis elegans] ref|NP_493139.1| T15D6.8 [Caenorhabditis elegans] 0.0
blast AAB70360 Hypothetical protein K06H6.4 [Caenorhabditis elegans] ref|NP_503251.1| K06H6.4 [Caenorhabditis elegans] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.0E-49
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000012747 1 3-25
Sequence
Target Sequence 
>C. ELEGANS:180872_AT
atttagatacgttccacacggcgtccattgcgaatcttcattttcgagtgaagtgggtta
tgaagcataacaataccccagagagatatgaaaatgataaacagttgaccagtgaaatgc
tgtttcacaaataccaaaacctttcccggatcggcaaggtttggcaacagccaaagtgca
ttattcgcccggaaaatgttgcatttatgacaattcaccaaccattgacaatgtacaaag
gagaaaaagacacgattgttgatgaaaacattgggtttattaggcactatcgaaatatac
aacaaagagtttttcgggaatctcctgatggaatggtgaatgcaatgatgtctcatggtc
catacagcattcaacctatagatcagtggattgagaaaaatttgacggaaaatatattga
gccgagtcaaactagtctacgatattgtcgatgtgacgtgtgatcagaaaaagaaaatgt
atgatgttgaacaagtgactgcaccatgtacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTAGATACGTTCCACACGGCGTC 163 15 992 Antisense
GCGTCCATTGCGAATCTTCATTTTC 88 291 1012 Antisense
GAAGCATAACAATACCCCAGAGAGA 612 341 1053 Antisense
TTCCCGGATCGGCAAGGTTTGGCAA 82 1 1134 Antisense
AGCCAAAGTGCATTATTCGCCCGGA 349 83 1160 Antisense
GACAATTCACCAACCATTGACAATG 145 365 1200 Antisense
GAGTTTTTCGGGAATCTCCTGATGG 660 397 1298 Antisense
GCAATGATGTCTCATGGTCCATACA 671 319 1333 Antisense
GGTCCATACAGCATTCAACCTATAG 8 503 1348 Antisense
GAGCCGAGTCAAACTAGTCTACGAT 469 379 1410 Antisense
GAACAAGTGACTGCACCATGTACAA 142 353 1480 Antisense
Sequence Source Affymetrix Proprietary Database