[Home] | [Total List]

[180871_at]

Description C44B7.4 /REP_DB=WormBase Gene ID /WP=CE02542 /TR=Q18593 /GB=AAA68335.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 0      4grp_high_8_8 > 45      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 352.1
(-1.7)
P 		603.5
(3)
P 		441.5
(-0)
P 		283.8
(-3)
P 		320
B 360.2
(-1.5)
P 		633.2
(3)
P 		506.7
(0.9)
P 		267.6
(-3)
P 		366
C 425.6
(-3)
P 		603.7
(3)
P 		490.2
(-0.8)
P 		456.7
(-2)
P 		178
avr 379.3
(-2.1) 		613.5
(3) 		479.5
(0.1) 		336
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 509.8
(2.2)
P 		462.9
(1.4)
P 		555
(3)
P 		337.4
(-0.8)
P 		330.2
(-0.9)
P 		209.1
(-3)
P 		346
B 480.2
(1.5)
P 		564.1
(3)
P 		413.8
(0.4)
P 		420.6
(0.5)
P 		222.7
(-3)
P 		244.9
(-2.6)
P 		341
C 378.2
(-0)
P 		533.1
(3)
P 		406.4
(0.5)
P 		429.8
(1)
P 		237.1
(-2.8)
P 		225.1
(-3)
P 		308
avr 456.1
(1.7) 		520
(3) 		458.4
(1.7) 		395.9
(0.5) 		263.3
(-2.2) 		226.4
(-3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 128.2
(2.8)
P 		131
(3)
P 		115.4
(2)
P 		41.5
(-3)
P 		90
B 114.8
(0.5)
P 		156.4
(3)
P 		117.4
(0.6)
P 		57
(-3)
P 		99
C 140.9
(1)
P 		173.6
(3)
P 		170.9
(2.8)
P 		77
(-3)
P 		97
avr 128
(1.4) 		153.7
(3) 		134.6
(1.8) 		58.5
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 94
(-0.7)
P 		164.6
(3)
P 		120.9
(0.7)
P 		85.6
(-1.2)
P 		99.7
(-0.4)
P 		50.9
(-3)
P 		114
B 167.1
(1.7)
P 		187.8
(3)
P 		100.5
(-2.4)
P 		111.4
(-1.7)
P 		90.5
(-3)
P 		91.3
(-3)
P 		97
C 140.2
(1.5)
P 		162.7
(3)
P 		103.4
(-1.1)
P 		86.4
(-2.2)
P 		76.7
(-2.9)
P 		75.4
(-3)
P 		87
avr 133.8
(0.7) 		171.7
(3) 		108.3
(-0.8) 		94.5
(-1.7) 		89
(-2) 		72.5
(-3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5025
Sequence Type Exemplar sequence
Representative Public ID C44B7.4 NCBI
Target Description C44B7.4 /REP_DB=WormBase Gene ID /WP=CE02542 /TR=Q18593 /GB=AAA68335.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063002 NCBI Caenorhabditis elegans C44B7.4 (C44B7.4) mRNA, complete cds. 11/11 None
C44B7.4 ENSEMBL cdna:known chromosome:CEL140:II:6868887:6870769:-1 gene:C44B7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042318 8/11 Cross Hyb Matching Probes None
GENEFINDER00000042334 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6868853-6870765(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B7.4
Entrez Gene 183429 Entrez gene
SwissProt Q18593 EMBL-EBI
WormBase CE34753 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68335 Hypothetical protein C44B7.4 [Caenorhabditis elegans] ref|NP_495403.2| C44B7.4 [Caenorhabditis elegans] 0.0
blast CAE65981 Hypothetical protein CBG11170 [Caenorhabditis briggsae] 0.0
blast AAH93379 Hypothetical protein LOC294430 [Rattus norvegicus] ref|NP_001020147.1| hypothetical protein LOC294430 [Rattus norvegicus] 2.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495403.2 4 21-38,58-80,101-123,192-209
C44B7.4 4 21-38,58-80,101-123,192-209
Sequence
Target Sequence 
>C. ELEGANS:180871_AT
ttatgcatcgactagctctttcaataaaattagcgacaatgggaagtactgtcctccatg
tatatgtgttccaaacccaactgatgcttcttaccttgaagccgagtcacaaatttacgc
gtggggccttttactgttttctggagtggctgcatttttggtgataacttgcaatcgaat
gtgtgacaagtacacactggttcagcgtcaatatgtggagacttacaaaaatgtagaaac
tcagaaattcgacgcggtcgctaaagaattccggaagtcaataatcccttgttcgcacgt
ctccgccttattgctgctgaaaaaactcaacaaacaatgtacacacctttacaattatgg
aatgacaataaaggataccgtatcccacaaccagatcttcaacttacacagattattgtg
gatgagacaaaagaagattgataatgttcatttttcgggtttacctctccttttcttctt
ttttgaaacttttcctcaactcaatcaattccttcacggtttcattttgtcaaggccaat
ttgtgtcagttcttgccgtattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGCATCGACTAGCTCTTTCAAT 689 679 474 Antisense
GGAAGTACTGTCCTCCATGTATATG 612 531 515 Antisense
CAAACCCAACTGATGCTTCTTACCT 695 191 545 Antisense
GGCCTTTTACTGTTTTCTGGAGTGG 588 541 598 Antisense
GACAAGTACACACTGGTTCAGCGTC 240 365 658 Antisense
AGTCAATAATCCCTTGTTCGCACGT 469 61 749 Antisense
TCTCCGCCTTATTGCTGCTGAAAAA 150 611 773 Antisense
TCCCACAACCAGATCTTCAACTTAC 212 599 856 Antisense
TCCTCAACTCAATCAATTCCTTCAC 233 593 966 Antisense
ATTCCTTCACGGTTTCATTTTGTCA 208 9 981 Antisense
ATTTGTGTCAGTTCTTGCCGTATTC 135 19 1012 Antisense
Sequence Source Affymetrix Proprietary Database