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[180870_at]

Description ZC196.3 /REP_DB=WormBase Gene ID /WP=CE15070 /TR=O01629 /GB=AAB52292.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 56      6grp_total > 56      4grp_total > 12      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 62.1
(-0)
P 		41.9
(-1.2)
A 		8.9
(-3)
A 		116.8
(3)
A 		108
B 56
(-1.5)
A 		30.6
(-3)
A 		42.9
(-2.3)
A 		132.1
(3)
P 		102
C 59.1
(-1)
P 		38.2
(-2.4)
A 		30.1
(-3)
A 		117.7
(3)
M 		88
avr 59.1
(-1) 		36.9
(-2.4) 		27.3
(-3) 		122.2
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 112
(-0.5)
P 		88.4
(-1.2)
P 		104.6
(-0.7)
P 		80.6
(-1.5)
P 		34.9
(-3)
A 		218
(3)
P 		183
B 67.6
(-2.9)
A 		98.7
(-1.3)
P 		93.7
(-1.5)
P 		73.7
(-2.6)
P 		66.1
(-3)
P 		179.8
(3)
P 		114
C 68.1
(-2.6)
M 		128.5
(0.8)
P 		64.4
(-2.8)
P 		86.9
(-1.5)
P 		60.2
(-3)
A 		166.7
(3)
P 		107
avr 82.6
(-1.7) 		105.2
(-0.7) 		87.6
(-1.5) 		80.4
(-1.8) 		53.7
(-3) 		188.2
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 22.6
(3)
P 		9.1
(-1)
A 		2.3
(-3)
A 		17.1
(1.4)
A 		20
B 17.9
(-0)
A 		7.6
(-3)
A 		9.9
(-2.3)
A 		28.2
(3)
P 		21
C 19.6
(2.9)
P 		11
(-2.7)
A 		10.5
(-3)
A 		19.8
(3)
M 		9
avr 20
(2.3) 		9.2
(-2.3) 		7.6
(-3) 		21.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 20.6
(-1.6)
P 		31.4
(-0.1)
P 		22.8
(-1.3)
P 		20.4
(-1.6)
P 		10.5
(-3)
A 		53.1
(3)
P 		43
B 23.5
(-2.5)
A 		32.8
(-1.3)
P 		22.8
(-2.6)
P 		19.5
(-3)
P 		26.8
(-2.1)
P 		67
(3)
P 		48
C 25.2
(-1.7)
M 		39.2
(0.5)
P 		16.4
(-3)
P 		17.5
(-2.8)
P 		19.5
(-2.5)
A 		55.8
(3)
P 		39
avr 23.1
(-2.4) 		34.5
(-0.6) 		20.7
(-2.7) 		19.1
(-3) 		18.9
(-3) 		58.6
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180870_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12139
Sequence Type Exemplar sequence
Representative Public ID ZC196.3 NCBI
Target Description ZC196.3 /REP_DB=WormBase Gene ID /WP=CE15070 /TR=O01629 /GB=AAB52292.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072849 NCBI Caenorhabditis elegans ZC196.3 (ZC196.3) mRNA, complete cds. 11/11 None
GENEFINDER00000023109 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8739262:8745022:1 11/11 None
ZC196.3 ENSEMBL cdna:known chromosome:CEL140:V:8739262:8741025:1 gene:ZC196.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8739262-8741026(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC196.3
Entrez Gene 191102 Entrez gene
SwissProt O01629 EMBL-EBI
WormBase CE15070 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52292 Hypothetical protein ZC196.3 [Caenorhabditis elegans] ref|NP_505250.1| ZC196.3 [Caenorhabditis elegans] 0.0
blast AAB52293 Hypothetical protein ZC196.2 [Caenorhabditis elegans] ref|NP_505251.1| ZC196.2 [Caenorhabditis elegans] 1.0E-130
blast CAE71571 Hypothetical protein CBG18522 [Caenorhabditis briggsae] 4.0E-37
blast CAE71571 Hypothetical protein CBG18522 [Caenorhabditis briggsae] 1.0E-36
blast AAB52296 Hypothetical protein ZC196.4 [Caenorhabditis elegans] ref|NP_505249.2| ZC196.4 [Caenorhabditis elegans] 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 9.9E-109
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 6.1E-7
Sequence
Target Sequence 
>C. ELEGANS:180870_AT
gagattttcagaatgtggcgcgtgaatggaaatattttaaacgcttaccgtcggaatcac
ttcaagatgcatatgaagaaatatcaattctttcagaatgtgtattaagcctatttgata
ctcttgagtttctgtttatccaactcggtgaacaacatgacatagctacagatgcattat
tcatcaaagttctacagaaaagtataattgattttgcacttgttttatcatcgattctga
atattcttgatgtgaacgccccgtcccacgaatggtataaacaactcgaaaagttgtttt
ttatgataaagctcagtgacattccgacaacaacatcactacgaaaaatttgcaaaaaag
ccgtcgtttccaactatgagcagttagaattcccgaagatacacctcaagagttacgtcg
tgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTTTCAGAATGTGGCGCGTGA 264 397 848 Antisense
AACGCTTACCGTCGGAATCACTTCA 32 141 887 Antisense
AAGCCTATTTGATACTCTTGAGTTT 451 147 954 Antisense
GTTTCTGTTTATCCAACTCGGTGAA 511 449 975 Antisense
TTGCACTTGTTTTATCATCGATTCT 377 703 1061 Antisense
AATATTCTTGATGTGAACGCCCCGT 44 175 1087 Antisense
AAAGCTCAGTGACATTCCGACAACA 153 125 1155 Antisense
CATTCCGACAACAACATCACTACGA 134 217 1167 Antisense
TGCAAAAAAGCCGTCGTTTCCAACT 31 577 1198 Antisense
GAATTCCCGAAGATACACCTCAAGA 697 323 1234 Antisense
CACCTCAAGAGTTACGTCGTGATCC 453 201 1249 Antisense
Sequence Source Affymetrix Proprietary Database