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[180869_at]

Description C13A2.1 /REP_DB=WormBase Gene ID /WP=CE08113 /TR=O16878 /GB=AAB69873.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 17      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 2.5
(-3)
A 		39.9
(3)
A 		6.9
(-2.3)
A 		29.8
(1.4)
A 		37
B 10.5
(-3)
A 		34.5
(0.8)
A 		34.2
(0.8)
A 		48.3
(3)
A 		38
C 17.3
(-2.3)
A 		7.1
(-3)
A 		13
(-2.6)
A 		93.9
(3)
A 		87
avr 10.1
(-3) 		27.2
(-0.8) 		18
(-2) 		57.3
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 736
1 2 3 4 5 6 range
A 15.9
(-3)
A 		52.9
(-2.7)
A 		153.5
(-1.9)
P 		738.5
(3)
P 		321.9
(-0.5)
P 		34.5
(-2.8)
A 		723
B 2.2
(-3)
A 		43
(-2.6)
A 		163.7
(-1.5)
P 		663.9
(3)
P 		325.8
(-0.1)
P 		46.7
(-2.6)
A 		662
C 26.1
(-3)
A 		98.9
(-2.3)
A 		233.6
(-1.1)
P 		695.5
(3)
P 		339.9
(-0.2)
P 		26.5
(-3)
A 		669
avr 14.7
(-3) 		64.9
(-2.6) 		183.6
(-1.5) 		699.3
(3) 		329.2
(-0.2) 		35.9
(-2.8) 		685
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.9
(-3)
A 		8.7
(3)
A 		1.8
(-2.3)
A 		4.4
(-0.3)
A 		8
B 3.4
(-3)
A 		8.5
(1.4)
A 		7.9
(0.9)
A 		10.3
(3)
A 		7
C 5.7
(-1.4)
A 		2
(-3)
A 		4.5
(-1.9)
A 		15.8
(3)
A 		14
avr 3.3
(-3) 		6.4
(-0.3) 		4.7
(-1.8) 		10.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 2.9
(-3)
A 		18.8
(-2.5)
A 		33.4
(-2)
P 		187.3
(3)
P 		97.1
(0.1)
P 		8.4
(-2.8)
A 		184
B 0.8
(-3)
A 		14.3
(-2.5)
A 		39.8
(-1.7)
P 		175.8
(3)
P 		132.4
(1.5)
P 		17.4
(-2.4)
A 		175
C 9.7
(-3)
A 		30.2
(-2)
A 		59.5
(-0.7)
P 		139.9
(3)
P 		110
(1.6)
P 		8.9
(-3)
A 		131
avr 4.5
(-3) 		21.1
(-2.4) 		44.2
(-1.5) 		167.7
(3) 		113.2
(1) 		11.6
(-2.7) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12232
Sequence Type Exemplar sequence
Representative Public ID C13A2.1 NCBI
Target Description C13A2.1 /REP_DB=WormBase Gene ID /WP=CE08113 /TR=O16878 /GB=AAB69873.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072453 NCBI Caenorhabditis elegans C13A2.1 (C13A2.1) mRNA, complete cds. 11/11 None
C13A2.1 ENSEMBL cdna:known chromosome:CEL140:V:7292048:7294424:1 gene:C13A2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7292048-7294425(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A2.1
Entrez Gene 182549 Entrez gene
SwissProt O16878 EMBL-EBI
WormBase CE35231 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69873 Hypothetical protein C13A2.1 [Caenorhabditis elegans] ref|NP_504854.2| C13A2.1 [Caenorhabditis elegans] 0.0
blast NP_504855 F07G11.4 [Caenorhabditis elegans] gb|AAG24051.1| Hypothetical protein F07G11.4 [Caenorhabditis elegans] 0.0
blast NP_504857 F07G11.3 [Caenorhabditis elegans] gb|AAG24048.1| Hypothetical protein F07G11.3 [Caenorhabditis elegans] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504854.2 1 19-35
C13A2.1 1 19-35
Sequence
Target Sequence 
>C. ELEGANS:180869_AT
aaaaagtgtagtcgatccgctgcgtgtcaactacacatctttacatttcccatcgcacgt
gcctgaaatagaaaagtatattgtgtcggaaaatgtgatcactcacattaaaacagttga
ctgggttgacataattgaggatcctaacgagaaacaagtagttgagcctctttattataa
cggtacatcggaaacaattatttccaaaaaagacattttggatctcgagaaagattttcg
taaaatgaggaagcagctgcagctcaagaaaactttatcaaagctccctagaattcgcta
ttattcggttctagcgtataaatgctacaccatgaagtactatgatttgtattatttcaa
tagaagatcaggaatcacgtgtcctggtccattatattgtaaattcaaacaacacccaaa
gatcaactgcatgcaagccaatgtcacatacagttcgatgagaaaattgctgcctatcac
gtattatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGTGTAGTCGATCCGCTGCGT 660 129 942 Antisense
CGCTGCGTGTCAACTACACATCTTT 555 255 959 Antisense
AACTACACATCTTTACATTTCCCAT 153 141 970 Antisense
TCCCATCGCACGTGCCTGAAATAGA 403 597 989 Antisense
AGTTGAGCCTCTTTATTATAACGGT 4 63 1101 Antisense
GCAGCTGCAGCTCAAGAAAACTTTA 275 313 1194 Antisense
AAAGCTCCCTAGAATTCGCTATTAT 31 125 1221 Antisense
AATCACGTGTCCTGGTCCATTATAT 301 171 1314 Antisense
CAACACCCAAAGATCAACTGCATGC 533 189 1351 Antisense
AACTGCATGCAAGCCAATGTCACAT 29 143 1366 Antisense
AAATTGCTGCCTATCACGTATTATT 609 115 1405 Antisense
Sequence Source Affymetrix Proprietary Database