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[180867_at]

Description K10G6.3 /REP_DB=WormBase Gene ID /WP=CE12102 /TR=O16625 /GB=AAB66098.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 04      4grp_high_8_8 > 43      6grp_total > 05      4grp_total > 53      6grp_cgc > 42      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 718.7
(3)
P 		590
(0.3)
P 		432.9
(-3)
M 		450.1
(-2.6)
A 		286
B 738.7
(3)
P 		587.8
(0.4)
P 		554.1
(-0.2)
P 		388.5
(-3)
P 		350
C 651.7
(1.2)
P 		751.7
(3)
P 		545.5
(-0.7)
P 		418.3
(-3)
P 		333
avr 703
(3) 		643.2
(1.7) 		510.8
(-1.1) 		419
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 588
1 2 3 4 5 6 range
A 686.8
(1.8)
P 		768.8
(3)
P 		429.1
(-2.2)
P 		373.8
(-3)
P 		544.9
(-0.4)
P 		391.6
(-2.7)
P 		395
B 612.4
(-0)
P 		792.7
(3)
P 		624.8
(0.2)
P 		563.8
(-0.9)
P 		438
(-3)
P 		452.9
(-2.7)
P 		355
C 881.5
(3)
P 		590.3
(0)
P 		517.7
(-0.7)
P 		393.6
(-2)
A 		636.2
(0.5)
P 		293.6
(-3)
P 		588
avr 726.9
(3) 		717.3
(2.8) 		523.9
(-0.5) 		443.7
(-1.9) 		539.7
(-0.2) 		379.4
(-3) 		348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 261.7
(3)
P 		128.1
(-1.1)
P 		113.2
(-1.6)
M 		65.9
(-3)
A 		196
B 235.6
(3)
P 		145.2
(-0.5)
P 		128.4
(-1.2)
P 		82.8
(-3)
P 		153
C 215.7
(3)
P 		216.1
(3)
P 		190.1
(1.9)
P 		70.5
(-3)
P 		146
avr 237.7
(3) 		163.1
(0.3) 		143.9
(-0.4) 		73.1
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 126.6
(-1.9)
P 		273.4
(3)
P 		93.5
(-3)
P 		94.8
(-3)
P 		164.4
(-0.6)
P 		95.3
(-2.9)
P 		180
B 213.1
(0.3)
P 		263.8
(3)
P 		151.7
(-2.9)
P 		149.3
(-3)
P 		178
(-1.5)
P 		168.9
(-2)
P 		115
C 326.7
(3)
P 		180.1
(-0.6)
P 		131.8
(-1.7)
P 		79.2
(-3)
A 		205.9
(0.1)
P 		98.3
(-2.5)
P 		248
avr 222.1
(2.2) 		239.1
(3) 		125.7
(-2.2) 		107.8
(-3) 		182.8
(0.4) 		120.8
(-2.4) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180867_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4473
Sequence Type Exemplar sequence
Representative Public ID K10G6.3 NCBI
Target Description K10G6.3 /REP_DB=WormBase Gene ID /WP=CE12102 /TR=O16625 /GB=AAB66098.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062300
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000011080 ENSEMBL cdna:SNAP chromosome:CEL140:II:3962217:3971538:1 10/11 None
GENEFINDER00000011086 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3957248:3971538:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062300 5/11 Cross Hyb Matching Probes None
K10G6.3 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3962215-3971478(+) 95.11 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494701 Signal Element on Autosome family member (sea-2) [Caenorhabditis elegans] gb|AAB66098.3| Signal element on autosome protein 2 [Caenorhabditis elegans] 0.0
blast CAE71516 Hypothetical protein CBG18450 [Caenorhabditis briggsae] 3.0E-44
blast CAE71517 Hypothetical protein CBG18451 [Caenorhabditis briggsae] 8.0E-13
blast CAE71517 Hypothetical protein CBG18451 [Caenorhabditis briggsae] 9.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.6E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.6E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011086 5 29-51,112-134,147-169,184-206,218-240
Sequence
Target Sequence 
>C. ELEGANS:180867_AT
cgctgcggcagaggctgctgttgaaaggatcggagcactgccgccaccgtcggttgttca
tgagattgtgcatcaagtgaatgcggatcggcagtcgatgaaaaaacacaacaaaacgac
atctccaccaccagctcaagaagcccctcccacatgtgctccagacgatccgatgtcgtc
atcatcatcatcatccacgtcatctgcatctcctctacaaggaggtgcgaagccgtccac
taatcaggcgagacattattgtcaggttgagccaacatcagcggctgacaaaatcgacct
aatattcatggataagtcaaaacgacgcgtctctcgaaccttcctgtgcaccgtctcatc
actcatctcgtattggctcggcgagcaaggcgatcggctcgagctcgacacgaaatggga
gcattttcagctgttgctggatgtgcatacgctcaaagttgccatcacagccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTGCGGCAGAGGCTGCTGTTGAA 63 255 4845 Antisense
TGAAAGGATCGGAGCACTGCCGCCA 270 573 4866 Antisense
CCGCCACCGTCGGTTGTTCATGAGA 31 263 4885 Antisense
GATCCGATGTCGTCATCATCATCAT 318 417 5011 Antisense
AAGCCGTCCACTAATCAGGCGAGAC 630 147 5074 Antisense
GGTTGAGCCAACATCAGCGGCTGAC 625 507 5109 Antisense
AGTCAAAACGACGCGTCTCTCGAAC 456 53 5159 Antisense
CATCACTCATCTCGTATTGGCTCGG 562 211 5201 Antisense
ATCGGCTCGAGCTCGACACGAAATG 474 33 5237 Antisense
GCTGTTGCTGGATGTGCATACGCTC 550 295 5274 Antisense
ACGCTCAAAGTTGCCATCACAGCCG 107 91 5293 Antisense
Sequence Source Affymetrix Proprietary Database