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[180865_at]

Description C32B5.5 /REP_DB=WormBase Gene ID /WP=CE08513 /TR=P91115 /GB=AAB37961.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 50      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.7
(-3)
A 		12.9
(3)
A 		9
(0.7)
A 		4.9
(-1.7)
A 		10
B 8.7
(1.5)
A 		5.9
(-1)
A 		10.4
(3)
A 		3.7
(-3)
A 		7
C 2.9
(-1.1)
A 		5.7
(3)
A 		1.6
(-3)
A 		3
(-1)
A 		4
avr 4.8
(-1.7) 		8.2
(3) 		7
(1.3) 		3.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.4
(3)
A 		3.9
(1.8)
A 		2
(-3)
A 		2.4
(-2)
A 		2.2
(-2.5)
A 		2.7
(-1.3)
A 		2
B 6.8
(0.9)
A 		9.2
(3)
A 		7.3
(1.3)
A 		2.4
(-3)
A 		6
(0.2)
A 		4.1
(-1.5)
A 		7
C 4.5
(-3)
A 		6.9
(-1.1)
A 		8.4
(0.1)
A 		6.1
(-1.7)
A 		7.7
(-0.5)
A 		12.1
(3)
A 		8
avr 5.2
(0.1) 		6.7
(3) 		5.9
(1.5) 		3.6
(-3) 		5.3
(0.3) 		6.3
(2.2) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(-2.1)
A 		2.8
(3)
A 		2.4
(1.9)
A 		0.7
(-3)
A 		2
B 2.8
(3)
A 		1.5
(-0.9)
A 		2.4
(1.8)
A 		0.8
(-3)
A 		2
C 1
(-0.3)
A 		1.6
(3)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		1
avr 1.6
(1.2) 		2
(3) 		1.8
(2.1) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.8
(-0.6)
A 		1.4
(3)
A 		0.4
(-3)
A 		0.6
(-1.8)
A 		0.7
(-1.2)
A 		0.7
(-1.2)
A 		1
B 2.4
(1.3)
A 		3.1
(3)
A 		1.8
(-0.1)
A 		0.6
(-3)
A 		2.4
(1.3)
A 		1.5
(-0.8)
A 		3
C 1.7
(-1.9)
A 		2.1
(-1.1)
A 		2.1
(-1.1)
A 		1.2
(-3)
A 		2.5
(-0.2)
A 		4
(3)
A 		3
avr 1.6
(0.4) 		2.2
(3) 		1.4
(-0.4) 		0.8
(-3) 		1.9
(1.7) 		2.1
(2.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4305
Sequence Type Exemplar sequence
Representative Public ID C32B5.5 NCBI
Target Description C32B5.5 /REP_DB=WormBase Gene ID /WP=CE08513 /TR=P91115 /GB=AAB37961.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061470 NCBI Caenorhabditis elegans C32B5.5 (C32B5.5) mRNA, complete cds. 11/11 None
C32B5.5 ENSEMBL cdna:known chromosome:CEL140:II:974309:975517:1 gene:C32B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:974307-975516(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32B5.5
Entrez Gene 183109 Entrez gene
SwissProt P91115 EMBL-EBI
WormBase CE34725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493871 C32B5.5 [Caenorhabditis elegans] gb|AAB37961.2| Hypothetical protein C32B5.5 [Caenorhabditis elegans] 1.0E-170
blast NP_493865 C32B5.16 [Caenorhabditis elegans] gb|AAB37971.1| Hypothetical protein C32B5.16 [Caenorhabditis elegans] 3.0E-41
blast NP_493872 C32B5.4 [Caenorhabditis elegans] gb|AAB37960.1| Hypothetical protein C32B5.4 [Caenorhabditis elegans] 8.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.2E-4
Sequence
Target Sequence 
>C. ELEGANS:180865_AT
gtgggccaacttgcaatttcttgtgaaaatcctctacgggttccgttagctgccaggatc
aatgtcaatgttttggaggtttttgattcccggagcttgtcggctgctagttcactaatt
gcaaactcttgtctaccattaagcttgataaaactcccatttaaaagccttctgaagact
aataacaatccaattacatcaatagtaaaccgaaaaactaaaaaatggcacttcaaagct
ccaaccacagctccacacaacctcaggcgggtactgacgttcctgcaaaatcggagagtt
acaactgcacatttcgaaaggggacacttctgcttttcaattgttatagaatactttatg
ggtgatagtgatatagaaaatggaacttattatacatttgacacaactaggggagctgta
tttgtagttatggagaggagtaggaagaggtataaagcgatgttggaagatggatcttct
cgacgttccaatcagctcaccatcaagaagaacagcacctcgaaattggttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGCCAACTTGCAATTTCTTGTG 151 489 445 Antisense
TGTGAAAATCCTCTACGGGTTCCGT 389 547 466 Antisense
GTTCCGTTAGCTGCCAGGATCAATG 98 441 484 Antisense
TTTTTGATTCCCGGAGCTTGTCGGC 610 673 524 Antisense
CTTGTCGGCTGCTAGTTCACTAATT 56 219 540 Antisense
CTAATTGCAAACTCTTGTCTACCAT 634 227 559 Antisense
ACTCCCATTTAAAAGCCTTCTGAAG 325 97 597 Antisense
AAATGGCACTTCAAAGCTCCAACCA 386 121 667 Antisense
TCAGGCGGGTACTGACGTTCCTGCA 314 623 707 Antisense
GGGACACTTCTGCTTTTCAATTGTT 614 493 765 Antisense
GAACAGCACCTCGAAATTGGTTATC 622 351 954 Antisense
Sequence Source Affymetrix Proprietary Database