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[180864_at]

Description W02D7.3 /REP_DB=WormBase Gene ID /WP=CE14440 /TR=O17524 /GB=AAB63933.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 04      6grp_total > 05      4grp_total > 50      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 370
1 2 3 4 range
A 361.6
(-3)
P 		686
(3)
P 		548.3
(0.5)
P 		427.3
(-1.8)
A 		324
B 423.8
(-1.1)
A 		656
(3)
P 		605.2
(2.1)
P 		315.7
(-3)
A 		340
C 393.1
(-2.3)
A 		638.4
(3)
P 		475.4
(-0.5)
P 		358.1
(-3)
M 		280
avr 392.8
(-2.5) 		660.1
(3) 		543
(0.6) 		367
(-3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 532.5
(3)
A 		503.2
(2.3)
P 		294.8
(-3)
P 		349
(-1.6)
P 		457.1
(1.1)
P 		365.9
(-1.2)
P 		238
B 393
(3)
M 		375.6
(2.1)
P 		379.5
(2.3)
P 		370.5
(1.8)
A 		330.3
(-0.2)
P 		276.7
(-3)
P 		116
C 430
(2.2)
P 		423
(1.8)
P 		447.3
(3)
P 		324.5
(-3)
A 		445.4
(2.9)
M 		343
(-2.1)
P 		123
avr 451.8
(3) 		433.9
(2.1) 		373.9
(-0.8) 		348
(-2.1) 		410.9
(1) 		328.5
(-3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 131.7
(1.8)
P 		148.9
(3)
P 		143.3
(2.6)
P 		62.6
(-3)
A 		86
B 135.2
(1.3)
A 		162
(3)
P 		140.2
(1.6)
P 		67.3
(-3)
A 		95
C 130.1
(0.4)
A 		183.5
(3)
P 		165.7
(2.1)
P 		60.4
(-3)
M 		123
avr 132.3
(1.1) 		164.8
(3) 		149.7
(2.1) 		63.4
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 98.2
(-1.2)
A 		179
(3)
P 		64.2
(-3)
P 		88.5
(-1.7)
P 		137.9
(0.9)
P 		89.1
(-1.7)
P 		115
B 136.8
(3)
M 		125
(1.4)
P 		92.1
(-3)
P 		98.1
(-2.2)
A 		134.2
(2.7)
P 		103.2
(-1.5)
P 		45
C 159.4
(3)
P 		129.1
(1.1)
P 		113.8
(0.1)
P 		65.3
(-3)
A 		144.1
(2)
M 		114.8
(0.2)
P 		94
avr 131.5
(1.7) 		144.4
(3) 		90
(-2.4) 		84
(-3) 		138.7
(2.4) 		102.4
(-1.2) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12123
Sequence Type Exemplar sequence
Representative Public ID W02D7.3 NCBI
Target Description W02D7.3 /REP_DB=WormBase Gene ID /WP=CE14440 /TR=O17524 /GB=AAB63933.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072740 NCBI Caenorhabditis elegans W02D7.3 (W02D7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000029347 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8296159:8297470:-1 11/11 None
W02D7.3 ENSEMBL cdna:known chromosome:CEL140:V:8296434:8297470:-1 gene:W02D7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029331 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8296434-8297471(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D7.3
Entrez Gene 189115 Entrez gene
SwissProt O17524 EMBL-EBI
WormBase CE14440 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505141 W02D7.3 [Caenorhabditis elegans] gb|AAB63933.1| Hypothetical protein W02D7.3 [Caenorhabditis elegans] 3.0E-62
blast NP_505141 W02D7.3 [Caenorhabditis elegans] gb|AAB63933.1| Hypothetical protein W02D7.3 [Caenorhabditis elegans] 7.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505141.1 1 109-131
W02D7.3 1 109-131
GENEFINDER00000029347 1 108-125
Sequence
Target Sequence 
>C. ELEGANS:180864_AT
gaatcatcgaccaccaacgattcgccggggccacctgcccaaccacaatcggttaggtcg
acatcaaaagccccactgccaaaatatacatcaattgatctggaaaatgaaattccagaa
atgtataatacttcccttaatcccggtattcacgatccggatatgacaatgtttttcaat
agaaatgctccaccatttcacacaaactatgcaaaacgacacagcccaccaccaagttat
tcatcgagatccaaacagagcagcgtctcctcttcagcaactcccactaaatcagcagtg
tctcggcgaaactatttggccggatgcttcctttgtgtatttttcgctgcgcctatcatt
ttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATCGACCACCAACGATTCGC 79 327 22 Antisense
ACCTGCCCAACCACAATCGGTTAGG 264 85 54 Antisense
AGCCCCACTGCCAAAATATACATCA 172 83 90 Antisense
TTCCCTTAATCCCGGTATTCACGAT 223 695 153 Antisense
GCTCCACCATTTCACACAAACTATG 434 297 208 Antisense
GATCCAAACAGAGCAGCGTCTCCTC 248 415 269 Antisense
CTTCAGCAACTCCCACTAAATCAGC 147 221 293 Antisense
AAATCAGCAGTGTCTCGGCGAAACT 404 117 310 Antisense
GAAACTATTTGGCCGGATGCTTCCT 335 357 329 Antisense
GATGCTTCCTTTGTGTATTTTTCGC 449 409 344 Antisense
ATTTTTCGCTGCGCCTATCATTTTC 551 15 360 Antisense
Sequence Source Affymetrix Proprietary Database