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[180863_at]

Description W10D9.1 /REP_DB=WormBase Gene ID /WP=CE14786 /TR=O17284 /GB=AAB71055.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 2.9
(-3)
A 		4.9
(-2.7)
A 		2.8
(-3)
A 		47.3
(3)
A 		45
B 3.2
(-3)
A 		3.8
(-2)
A 		3.5
(-2.5)
A 		6.7
(3)
A 		4
C 2.6
(-3)
A 		7.4
(3)
A 		4.4
(-0.8)
A 		7.1
(2.6)
A 		5
avr 2.9
(-3) 		5.4
(-2.1) 		3.6
(-2.8) 		20.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.5
(-0.3)
A 		3.6
(-1.4)
A 		2.2
(-3)
A 		3.8
(-1.2)
A 		7.4
(3)
A 		3.3
(-1.7)
A 		5
B 4.2
(-1)
A 		6.5
(1.7)
A 		7.6
(3)
A 		6.2
(1.4)
A 		2.5
(-3)
A 		5.4
(0.4)
A 		5
C 3.8
(-2.7)
A 		2
(-3)
A 		3.5
(-2.8)
A 		4.9
(-2.5)
A 		3
(-2.8)
A 		39.4
(3)
A 		37
avr 4.2
(-2.9) 		4
(-3) 		4.4
(-2.8) 		5
(-2.5) 		4.3
(-2.9) 		16
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.1
(-2.6)
A 		1.1
(-2.6)
A 		0.7
(-3)
A 		6.9
(3)
A 		6
B 1
(-1)
A 		0.9
(-2)
A 		0.8
(-3)
A 		1.4
(3)
A 		1
C 0.9
(-3)
A 		2.1
(3)
A 		1.5
(-0)
A 		1.2
(-1.5)
A 		1
avr 1
(-3) 		1.4
(-1.9) 		1
(-3) 		3.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-1.9)
A 		1.3
(-0.2)
A 		0.5
(-3)
A 		1
(-1.2)
A 		2.2
(3)
A 		0.8
(-1.9)
A 		2
B 1.5
(-0.5)
A 		2.2
(3)
A 		1.8
(1)
A 		1.6
(0)
A 		1
(-3)
A 		2
(2)
A 		1
C 1.4
(-2.6)
A 		0.6
(-3)
A 		0.9
(-2.9)
A 		1
(-2.8)
A 		1
(-2.8)
A 		13.2
(3)
A 		13
avr 1.2
(-2.9) 		1.4
(-2.6) 		1.1
(-3) 		1.2
(-2.9) 		1.4
(-2.6) 		5.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4304
Sequence Type Exemplar sequence
Representative Public ID W10D9.1 NCBI
Target Description W10D9.1 /REP_DB=WormBase Gene ID /WP=CE14786 /TR=O17284 /GB=AAB71055.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061337 NCBI Caenorhabditis elegans W10D9.1 (W10D9.1) mRNA, complete cds. 11/11 None
W10D9.1 ENSEMBL cdna:known chromosome:CEL140:II:454420:455354:1 gene:W10D9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024350 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:454419-455354(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10D9.1
Entrez Gene 189333 Entrez gene
SwissProt O17284 EMBL-EBI
WormBase CE14786 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71055 Hypothetical protein W10D9.1 [Caenorhabditis elegans] ref|NP_493738.1| W10D9.1 [Caenorhabditis elegans] 4.0E-90
blast AAG23386 Hypothetical protein Y73E7A.5 [Caenorhabditis elegans] ref|NP_490869.1| Y73E7A.5 [Caenorhabditis elegans] 2.0E-15
blast G88021 protein W10D9.2 [imported] - Caenorhabditis elegans 2.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493738.1 2 97-119,131-150
W10D9.1 2 97-119,131-150
Sequence
Target Sequence 
>C. ELEGANS:180863_AT
aagcgagcctacacttgctcattgtaacaagttctttcagtgatgatttggaattagtcg
attggccaaatggacgagatatcgagagaagtgatggcctacttgcaactattttagtcg
aatccaacgccaagtgctttcttatatggcatgataggttcccgacggatccccaagcat
tatttcaattctcggagaatgaatcattcgatgattttattgaatttttaaaagacaaaa
aacgtgctcagctattgacctctcatagtgagaatcttattgggtctccccatctgtccg
tgacgtctctagctagtgctctgtttctcttactgtgttactgtgtcgatcaatactatt
ttttgcgaaccattttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGAGCCTACACTTGCTCATTGT 213 149 23 Antisense
CTATTTTAGTCGAATCCAACGCCAA 356 223 131 Antisense
ATCCAACGCCAAGTGCTTTCTTATA 683 39 144 Antisense
CTTATATGGCATGATAGGTTCCCGA 66 223 163 Antisense
CGGATCCCCAAGCATTATTTCAATT 463 243 188 Antisense
AAAACGTGCTCAGCTATTGACCTCT 474 131 261 Antisense
AGAATCTTATTGGGTCTCCCCATCT 648 75 293 Antisense
TCTAGCTAGTGCTCTGTTTCTCTTA 114 615 330 Antisense
GTTTCTCTTACTGTGTTACTGTGTC 295 451 345 Antisense
GTTACTGTGTCGATCAATACTATTT 228 447 359 Antisense
TACTATTTTTTGCGAACCATTTTCA 527 645 376 Antisense
Sequence Source Affymetrix Proprietary Database