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[180862_s_at]

Description T07D1.2 /REP_DB=WormBase Gene ID /WP=CE07469 /TR=Q22302 /GB=AAA83159.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 60      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 52      6grp_total > 61      4grp_total > 46      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 629.4
(3)
P 		401.1
(-1.6)
P 		333.4
(-3)
P 		348.1
(-2.7)
P 		296
B 648.3
(3)
P 		427.8
(-1.6)
P 		359.7
(-3)
P 		426.4
(-1.6)
P 		289
C 643.9
(3)
P 		435.1
(-1.1)
P 		409.5
(-1.6)
P 		340.5
(-3)
P 		303
avr 640.5
(3) 		421.3
(-1.8) 		367.5
(-3) 		371.7
(-2.9) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 625.5
(-0.7)
P 		708.7
(0.7)
P 		717.9
(0.9)
P 		837.5
(3)
P 		692.3
(0.4)
P 		496.2
(-3)
P 		341
B 734.8
(0.7)
P 		741.9
(0.8)
P 		831.6
(2.3)
P 		876.3
(3)
P 		782.3
(1.5)
P 		510.9
(-3)
P 		365
C 667.6
(-1.5)
P 		783.6
(0.7)
P 		830.4
(1.6)
P 		905.5
(3)
P 		587.4
(-3)
P 		610.8
(-2.6)
P 		318
avr 676
(-0.5) 		744.7
(0.7) 		793.3
(1.6) 		873.1
(3) 		687.3
(-0.3) 		539.3
(-3) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 229.2
(3)
P 		87.1
(-1.8)
P 		87.1
(-1.8)
P 		51
(-3)
P 		178
B 206.7
(3)
P 		105.7
(-1.9)
P 		83.4
(-3)
P 		90.9
(-2.6)
P 		123
C 213.2
(3)
P 		125.1
(-0.4)
P 		142.7
(0.3)
P 		57.4
(-3)
P 		156
avr 216.4
(3) 		106
(-1.4) 		104.4
(-1.5) 		66.4
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 115.3
(-3)
P 		252.1
(3)
P 		156.3
(-1.2)
P 		212.4
(1.3)
P 		208.9
(1.1)
P 		120.8
(-2.8)
P 		137
B 255.7
(0.1)
P 		247
(-0.3)
P 		201.9
(-2.5)
P 		232.1
(-1)
P 		317.8
(3)
P 		190.5
(-3)
P 		127
C 247.4
(3)
P 		239.1
(2.2)
P 		211.3
(-0.3)
P 		182.1
(-3)
P 		190.1
(-2.3)
P 		204.5
(-0.9)
P 		65
avr 206.1
(-0.2) 		246.1
(3) 		189.8
(-1.6) 		208.9
(-0) 		238.9
(2.4) 		171.9
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180862_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18477
Sequence Type Exemplar sequence
Representative Public ID T07D1.2 NCBI
Target Description T07D1.2 /REP_DB=WormBase Gene ID /WP=CE07469 /TR=Q22302 /GB=AAA83159.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076043 NCBI Caenorhabditis elegans T07D1.2 (T07D1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000042795 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2430004:2435502:-1 11/11 None
SNAP00000042789 ENSEMBL cdna:SNAP chromosome:CEL140:X:2431067:2431981:-1 9/11 None
T07D1.2.1 ENSEMBL cdna:known chromosome:CEL140:X:2429853:2439153:-1 gene:T07D1.2 11/11 None
T07D1.2.2 ENSEMBL cdna:known chromosome:CEL140:X:2429867:2439151:-1 gene:T07D1.2 11/11 None
T07D1.2.3 ENSEMBL cdna:known chromosome:CEL140:X:2429867:2438996:-1 gene:T07D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2430094-2435179(-) 97.04 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D1.2
Entrez Gene 180548 Entrez gene
SwissProt Q22302 EMBL-EBI
WormBase CE29467 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13990_AT expressed protein at
ATH1-121501:265289_AT expressed protein at
CANINE_2:CFA.16792.1.A1_AT similar to CG3295-PA cfa
CANINE_2:CFA.995.1.S1_S_AT similar to CG3295-PA cfa
DROSOPHILA_2:1627592_AT dm
DROSGENOME1:147593_AT dm
CHICKEN:GGA.15915.1.S1_AT similar to hypothetical protein FLJ13910 gga
CHICKEN:GGAAFFX.12229.1.S1_S_AT similar to hypothetical protein FLJ13910 gga
HU35KSUBA:H87911_AT hypothetical protein FLJ13910 hs
HU35KSUBA:H20627_AT hypothetical protein FLJ13910 hs
HU35KSUBA:RC_AA504642_AT hypothetical protein FLJ13910 hs
HU35KSUBB:RC_H65865_AT hypothetical protein FLJ13910 hs
HU35KSUBC:RC_AA280828_AT hypothetical protein FLJ13910 hs
HU35KSUBD:RC_H75939_S_AT hypothetical protein FLJ13910 hs
U133_X3P:HS.75277.1.A3_3P_AT hypothetical protein FLJ13910 hs
U133_X3P:HS.75277.1.A2_3P_AT hypothetical protein FLJ13910 hs
U133_X3P:HS.75277.1.A1_3P_A_AT hypothetical protein FLJ13910 hs
HG-U133A_2:212478_AT hypothetical protein FLJ13910 hs
HG-U133_PLUS_2:212478_AT hypothetical protein FLJ13910 hs
HG-U133A:212478_AT hypothetical protein FLJ13910 hs
HG-U133A_2:212479_S_AT hypothetical protein FLJ13910 hs
HG-U133_PLUS_2:212479_S_AT hypothetical protein FLJ13910 hs
HG-U133A:212479_S_AT hypothetical protein FLJ13910 hs
HG-U133A_2:212482_AT hypothetical protein FLJ13910 hs
HG-U133_PLUS_2:212482_AT hypothetical protein FLJ13910 hs
HG-U133A:212482_AT hypothetical protein FLJ13910 hs
HG-U95AV2:36580_AT hypothetical protein FLJ13910 hs
HG-U95B:44136_AT hypothetical protein FLJ13910 hs
HG-U133_PLUS_2:241532_AT Hypothetical protein FLJ13910 hs
HG-U133B:241532_AT Hypothetical protein FLJ13910 hs
HU35KSUBA:RC_AA279137_AT Hypothetical protein FLJ13910 hs
MOUSE430_2:1431068_AT RIKEN cDNA 1110007A06 gene mm
MOE430B:1431068_AT RIKEN cDNA 1110007A06 gene mm
MG-U74AV2:97908_AT RIKEN cDNA 1110007A06 gene mm
MG-U74BV2:114881_AT RIKEN cDNA 1110007A06 gene mm
MG-U74BV2:110191_AT RIKEN cDNA 1110007A06 gene mm
MG-U74BV2:105205_AT RIKEN cDNA 1110007A06 gene mm
MOE430A:1426884_AT RIKEN cDNA 1110007A06 gene mm
MOUSE430A_2:1426884_AT RIKEN cDNA 1110007A06 gene mm
MOUSE430_2:1426884_AT RIKEN cDNA 1110007A06 gene mm
MG-U74BV2:105477_AT RIKEN cDNA 1110007A06 gene (1110007A06Rik), mRNA mm
MG-U74CV2:136162_AT RIKEN cDNA 1110007A06 gene (1110007A06Rik), mRNA mm
MOE430B:1444195_AT RIKEN cDNA 1110007A06 gene (1110007A06Rik), mRNA mm
MOUSE430_2:1444195_AT RIKEN cDNA 1110007A06 gene (1110007A06Rik), mRNA mm
MU19KSUBA:TC15513_AT RIKEN cDNA 1110007A06 gene (1110007A06Rik), mRNA mm
MU19KSUBB:TC34487_AT RIKEN cDNA 1110007A06 gene (1110007A06Rik), mRNA mm
RAE230B:1382530_AT Similar to hypothetical protein FLJ13910 (predicted) rn
RAT230_2:1382530_AT Similar to hypothetical protein FLJ13910 (predicted) rn
RAE230A:1388749_AT Similar to hypothetical protein FLJ13910 (predicted) rn
RAT230_2:1388749_AT Similar to hypothetical protein FLJ13910 (predicted) rn
RG-U34B:RC_AI044286_AT Similar to hypothetical protein FLJ13910 (predicted) rn
RG-U34C:RC_AI104325_AT Similar to hypothetical protein FLJ13910 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA83159 Hypothetical protein T07D1.2 [Caenorhabditis elegans] ref|NP_508444.1| T07D1.2 [Caenorhabditis elegans] 0.0
blast AAA83159 Hypothetical protein T07D1.2 [Caenorhabditis elegans] ref|NP_508444.1| T07D1.2 [Caenorhabditis elegans] 5.0E-88
blast CAE58876 Hypothetical protein CBG02109 [Caenorhabditis briggsae] 3.0E-78
Sequence
Target Sequence 
>C. ELEGANS:180862_S_AT
tcaagtcaccattcgtcgacgacaggcaaaagttcaagcacttggtcggagcacttcttg
tcggaaaaccatcgatgattgatataagatacaagtatcttttcgacttcacaaatcgtg
aaattctaacgttgaaaatggcgtctttcttcataccctacgaagccccgttaaaaaatt
taatgcgatttggcatgcatgcaatgatccaactcggtgatctatttcccgtcggttttg
ctcctgcagcaatcgatgataatgaacttccgattgaaatcggcttccacgcaacacatt
cctcgtttacctgtccgattctgaaagagcagtgtgacgcggaaaatcctccaatgcggt
tgatttgtggccatgtcatatctaaagatgcaatcaatcgtttgacaacaagcattcgtc
agcaaagaaatagttcgagactctcaaaattcaaatgcccgtattgcccacgcgagcaat
tactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGTCACCATTCGTCGACGACAG 530 631 692 Antisense
GTTCAAGCACTTGGTCGGAGCACTT 270 445 723 Antisense
GTATCTTTTCGACTTCACAAATCGT 332 453 786 Antisense
GAAAATGGCGTCTTTCTTCATACCC 333 353 825 Antisense
GTCTTTCTTCATACCCTACGAAGCC 521 469 834 Antisense
ATGCATGCAATGATCCAACTCGGTG 391 43 886 Antisense
CAACTCGGTGATCTATTTCCCGTCG 668 185 901 Antisense
GACGCGGAAAATCCTCCAATGCGGT 289 381 1027 Antisense
GCGGTTGATTTGTGGCCATGTCATA 138 293 1047 Antisense
AAATTCAAATGCCCGTATTGCCCAC 455 115 1138 Antisense
GTATTGCCCACGCGAGCAATTACTG 305 451 1152 Antisense
Sequence Source Affymetrix Proprietary Database