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[180861_at]

Description C08G9.2 /REP_DB=WormBase Gene ID /WP=CE24793 /TR=O44131 /GB=AAB88311.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      6grp_total > 04      4grp_total > 50      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 61.8
(-3)
M 		135.2
(3)
P 		92.6
(-0.5)
P 		64
(-2.8)
A 		73
B 63.9
(-1.3)
A 		144.6
(3)
P 		94.7
(0.3)
P 		32.2
(-3)
A 		112
C 57.7
(-0.7)
A 		146.4
(3)
P 		123
(2)
P 		3.9
(-3)
A 		143
avr 61.1
(-1.5) 		142.1
(3) 		103.4
(0.9) 		33.4
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 143.6
(3)
P 		118.7
(1.6)
P 		85.7
(-0.2)
P 		82.9
(-0.4)
P 		78.7
(-0.6)
P 		36.5
(-3)
A 		107
B 121.8
(3)
P 		119.8
(2.8)
P 		68.1
(-3)
P 		86.2
(-1)
P 		87.6
(-0.8)
P 		84.6
(-1.2)
P 		54
C 145.2
(3)
P 		132.6
(2)
P 		105
(-0.1)
P 		107.4
(0.1)
A 		90.2
(-1.2)
P 		67.3
(-3)
P 		78
avr 136.9
(3) 		123.7
(1.9) 		86.3
(-1.1) 		92.2
(-0.6) 		85.5
(-1.2) 		62.8
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 22.5
(0.9)
M 		29.3
(3)
P 		24.2
(1.5)
P 		9.4
(-3)
A 		20
B 20.4
(-0.2)
A 		35.7
(3)
P 		21.9
(0.1)
P 		6.9
(-3)
A 		29
C 19.1
(-0.4)
A 		42.1
(2.9)
P 		42.9
(3)
P 		0.7
(-3)
A 		42
avr 20.7
(-0) 		35.7
(3) 		29.7
(1.8) 		5.7
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 26.5
(0.2)
P 		42.2
(3)
P 		18.7
(-1.2)
P 		21
(-0.8)
P 		23.7
(-0.3)
P 		8.9
(-3)
A 		33
B 42.4
(3)
P 		39.9
(2.4)
P 		16.5
(-3)
P 		22.8
(-1.5)
P 		35.6
(1.4)
P 		31.5
(0.5)
P 		26
C 53.8
(3)
P 		40.5
(0.5)
P 		26.7
(-2)
P 		21.6
(-3)
A 		29.2
(-1.6)
P 		22.5
(-2.8)
P 		32
avr 40.9
(3) 		40.9
(3) 		20.6
(-3) 		21.8
(-2.6) 		29.5
(-0.4) 		21
(-2.9) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8723
Sequence Type Exemplar sequence
Representative Public ID C08G9.2 NCBI
Target Description C08G9.2 /REP_DB=WormBase Gene ID /WP=CE24793 /TR=O44131 /GB=AAB88311.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068848 NCBI Caenorhabditis elegans C08G9.2 (C08G9.2) mRNA, complete cds. 11/11 None
SNAP00000017174 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7664256:7672067:-1 10/11 None
GENEFINDER00000017181 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7664256:7672714:-1 11/11 None
C08G9.2 ENSEMBL cdna:known chromosome:CEL140:IV:7664256:7672863:-1 gene:C08G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7664261-7672869(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08G9.2
Entrez Gene 177545 Entrez gene
SwissProt O44131 EMBL-EBI
WormBase CE24793 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB88311 Hypothetical protein C08G9.2 [Caenorhabditis elegans] ref|NP_501249.1| C08G9.2 [Caenorhabditis elegans] 0.0
blast CAE61938 Hypothetical protein CBG05936 [Caenorhabditis briggsae] 0.0
blast EAL27023 GA19022-PA [Drosophila pseudoobscura] 3.0E-45
blast EAL27023 GA19022-PA [Drosophila pseudoobscura] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR004094 EMBL-EBI Antistasin 1.4E-16
Pfam IPR004094 EMBL-EBI Antistasin 6.7E-16
Pfam IPR004094 EMBL-EBI Antistasin 1.3E-15
Pfam IPR004094 EMBL-EBI Antistasin 1.6E-16
Pfam IPR004094 EMBL-EBI Antistasin 3.7E-16
Pfam IPR004094 EMBL-EBI Antistasin 1.6E-15
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-27
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 1.5E-6
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 7.5E-10
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 1.4E-7
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 3.8E-7
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 3.7E-7
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 1.8E-10
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.6E-11
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.6E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 8.1E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 4.9E-12
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 4.2E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.0E-13
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.1E-13
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.9E-7
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.7E-14
Pfam IPR004094 EMBL-EBI Antistasin 1.4E-16
Pfam IPR004094 EMBL-EBI Antistasin 6.7E-16
Pfam IPR004094 EMBL-EBI Antistasin 1.3E-15
Pfam IPR004094 EMBL-EBI Antistasin 1.6E-16
Pfam IPR004094 EMBL-EBI Antistasin 3.7E-16
Pfam IPR004094 EMBL-EBI Antistasin 1.6E-15
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-27
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 1.5E-6
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 7.5E-10
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 3.8E-7
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 3.7E-7
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 1.8E-10
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.6E-11
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.6E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 8.1E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 4.9E-12
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 4.2E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.0E-13
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.1E-13
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.9E-7
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.7E-14
Pfam IPR004094 EMBL-EBI Antistasin 1.4E-16
Pfam IPR004094 EMBL-EBI Antistasin 6.7E-16
Pfam IPR004094 EMBL-EBI Antistasin 1.3E-15
Pfam IPR004094 EMBL-EBI Antistasin 1.6E-16
Pfam IPR004094 EMBL-EBI Antistasin 3.7E-16
Pfam IPR004094 EMBL-EBI Antistasin 1.6E-15
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-27
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 1.5E-6
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 7.5E-10
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 1.4E-7
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 3.8E-7
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 3.7E-7
Pfam IPR000716 EMBL-EBI Thyroglobulin type-1 1.8E-10
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.6E-11
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.6E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 8.1E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 4.9E-12
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 4.2E-14
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.0E-13
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.1E-13
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 2.9E-7
Pfam IPR008197 EMBL-EBI Whey acidic protein, core region 1.7E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501249.1 1 2130-2152
C08G9.2 1 2130-2152
SNAP00000017174 1 2029-2051
GENEFINDER00000017181 1 2057-2079
Sequence
Target Sequence 
>C. ELEGANS:180861_AT
aattgctttcactctttctggtggaaaaattaaaagcacaaaaatgcaagatgctgaaat
ccaacttatcaacacactggttgaacgtttcaaaattccacgtggaagcattgaagatgt
aattcttcgggatgacaacactgtcaaattcacaattcgtgatgttgatgctcgacggtt
tgcaagagaagtatctgaaaaagtgtcaactggtgaatggacaatgaccctctctgggca
aaaactgacagcagagcctcatacgttgacagcttcacatgtttcaaacgagcacggaag
gaaaaatacggcccaggttatcctttatgcaatattactcgcagcttcaatcttccttct
gtgtgttatctgtctaattggtttttcttgtttctgctactacagaaatcatccaaaaga
tagagctcacactccgaccaacactacaacaataac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCTTTCACTCTTTCTGGTGGA 67 179 6075 Antisense
AATTCTTCGGGATGACAACACTGTC 185 177 6195 Antisense
GTGATGTTGATGCTCGACGGTTTGC 535 483 6233 Antisense
GACAATGACCCTCTCTGGGCAAAAA 494 363 6294 Antisense
GACAGCAGAGCCTCATACGTTGACA 463 367 6321 Antisense
TACGTTGACAGCTTCACATGTTTCA 213 649 6336 Antisense
TACGGCCCAGGTTATCCTTTATGCA 628 647 6381 Antisense
AATATTACTCGCAGCTTCAATCTTC 7 175 6405 Antisense
TTCCTTCTGTGTGTTATCTGTCTAA 587 699 6427 Antisense
ATTGGTTTTTCTTGTTTCTGCTACT 119 5 6451 Antisense
CTCCGACCAACACTACAACAATAAC 540 233 6506 Antisense
Sequence Source Affymetrix Proprietary Database