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[180860_at]

Description E02H9.9 /REP_DB=WormBase Gene ID /WP=CE09126 /TR=Q9TZ95 /GB=AAC68774.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.7
(-2.9)
A 		6.7
(-1.1)
A 		17.5
(3)
A 		1.5
(-3)
A 		16
B 8.3
(-1.5)
A 		0.9
(-3)
A 		11.7
(-0.8)
A 		30.9
(3)
A 		30
C 8.3
(3)
A 		3.4
(-1.5)
A 		1.7
(-3)
A 		3.4
(-1.5)
A 		7
avr 6.1
(-1.2) 		3.7
(-3) 		10.3
(1.8) 		11.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 24.4
(1.2)
A 		2.8
(-2.9)
A 		2.5
(-3)
A 		17.4
(-0.1)
A 		33.8
(3)
A 		4
(-2.7)
A 		31
B 16.3
(1.4)
A 		2.4
(-3)
A 		2.8
(-2.9)
A 		11.1
(-0.2)
A 		2.5
(-3)
A 		21.2
(3)
A 		19
C 1.1
(-3)
A 		8.2
(1.3)
A 		1.3
(-2.9)
A 		2.9
(-1.9)
A 		11
(3)
A 		2.2
(-2.3)
A 		10
avr 13.9
(2.2) 		4.5
(-2) 		2.2
(-3) 		10.5
(0.7) 		15.8
(3) 		9.1
(0) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-2.5)
A 		1.4
(-1.4)
A 		4.6
(3)
A 		0.2
(-3)
A 		4
B 2.6
(-0.8)
A 		0.2
(-3)
A 		2.7
(-0.7)
A 		6.6
(3)
A 		6
C 2.7
(3)
A 		1
(-1.9)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2
avr 2
(0.9) 		0.9
(-3) 		2.6
(3) 		2.5
(2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.5
(-0.6)
A 		1
(-2.8)
A 		0.6
(-3)
A 		4.4
(-0.6)
A 		10.2
(3)
A 		1
(-2.8)
A 		10
B 5.7
(1.2)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		2.9
(-1.2)
A 		1
(-2.8)
A 		7.9
(3)
A 		7
C 0.4
(-2.8)
A 		2.5
(1)
A 		0.3
(-3)
A 		0.6
(-2.5)
A 		3.6
(3)
A 		0.7
(-2.3)
A 		3
avr 3.5
(1.1) 		1.4
(-1.8) 		0.5
(-3) 		2.6
(-0.1) 		4.9
(3) 		3.2
(0.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8027
Sequence Type Exemplar sequence
Representative Public ID E02H9.9 NCBI
Target Description E02H9.9 /REP_DB=WormBase Gene ID /WP=CE09126 /TR=Q9TZ95 /GB=AAC68774.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065162 NCBI Caenorhabditis elegans E02H9.9 (E02H9.9) mRNA, complete cds. 11/11 None
SNAP00000038957 ENSEMBL cdna:SNAP chromosome:CEL140:III:2467335:2468273:-1 9/11 None
GENEFINDER00000038962 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2467335:2468273:-1 9/11 None
E02H9.9 ENSEMBL cdna:known chromosome:CEL140:III:2467335:2468149:-1 gene:E02H9.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2467334-2468149(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02H9.9
Entrez Gene 184004 Entrez gene
SwissProt Q9TZ95 EMBL-EBI
WormBase CE09126 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68774 Hypothetical protein E02H9.9 [Caenorhabditis elegans] ref|NP_497563.1| E02H9.9 [Caenorhabditis elegans] 4.0E-59
blast AAC68774 Hypothetical protein E02H9.9 [Caenorhabditis elegans] ref|NP_497563.1| E02H9.9 [Caenorhabditis elegans] 8.0E-46
blast AAC68767 Hypothetical protein E02H9.1 [Caenorhabditis elegans] ref|NP_497564.1| E02H9.1 [Caenorhabditis elegans] 2.0E-26
blast AAC68767 Hypothetical protein E02H9.1 [Caenorhabditis elegans] ref|NP_497564.1| E02H9.1 [Caenorhabditis elegans] 1.0E-14
blast CAE66415 Hypothetical protein CBG11683 [Caenorhabditis briggsae] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:180860_AT
gtgagttgtcaggatttgggccatcaacttttttttctgaaattttcagcaaagaagtgg
acgacaagattggagagactgattggatggtttcaaggaggccgaatacgtacgatgtta
ttggaaatgatactgacgacggagctgatattttgcaggagtttgaaatctacatgctca
tcatccacgactgcaatccaagtagaaatgttaagtcactgaaagtcgactggggaacgt
acaacatttatcttgcaacagtcgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGTTGTCAGGATTTGGGCCATC 463 483 29 Antisense
TTGGGCCATCAACTTTTTTTTCTGA 689 707 44 Antisense
GATTGGATGGTTTCAAGGAGGCCGA 52 435 109 Antisense
GGAGGCCGAATACGTACGATGTTAT 170 515 125 Antisense
GGAAATGATACTGACGACGGAGCTG 169 527 151 Antisense
GACGGAGCTGATATTTTGCAGGAGT 467 375 166 Antisense
GCAGGAGTTTGAAATCTACATGCTC 582 311 183 Antisense
CACGACTGCAATCCAAGTAGAAATG 5 201 214 Antisense
GTCACTGAAAGTCGACTGGGGAACG 667 455 243 Antisense
GACTGGGGAACGTACAACATTTATC 387 375 256 Antisense
ACATTTATCTTGCAACAGTCGACAA 338 105 272 Antisense
Sequence Source Affymetrix Proprietary Database