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[180859_at]

Description C18B12.5 /REP_DB=WormBase Gene ID /WP=CE08309 /TR=Q93247 /GB=CAA20926.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 15      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 37.5
(0.4)
A 		4.7
(-3)
A 		38.4
(0.5)
A 		62.6
(3)
A 		58
B 54.9
(3)
A 		53.4
(2.2)
A 		43
(-3)
A 		45.6
(-1.7)
A 		12
C 95.2
(3)
A 		32.4
(-3)
A 		38
(-2.5)
A 		71.6
(0.7)
P 		63
avr 62.5
(3) 		30.2
(-3) 		39.8
(-1.2) 		59.9
(2.5) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 107.3
(3)
A 		51
(-1.3)
A 		41.2
(-2.1)
A 		37.4
(-2.4)
A 		29.4
(-3)
A 		32.4
(-2.8)
A 		78
B 58
(1.3)
A 		64.7
(2.8)
A 		45.8
(-1.4)
A 		65.4
(3)
A 		45.3
(-1.5)
A 		38.5
(-3)
A 		27
C 58.9
(1.4)
A 		67.4
(3)
A 		35.9
(-3)
A 		39.8
(-2.3)
A 		38.1
(-2.6)
A 		64.8
(2.5)
M 		32
avr 74.7
(3) 		61
(0.8) 		41
(-2.5) 		47.5
(-1.4) 		37.6
(-3) 		45.2
(-1.8) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 13.7
(3)
A 		1
(-3)
A 		10
(1.3)
A 		9.2
(0.9)
A 		13
B 17.5
(3)
A 		13.2
(-0.3)
A 		10
(-2.8)
A 		9.7
(-3)
A 		8
C 31.5
(3)
A 		9.3
(-3)
A 		13.2
(-1.9)
A 		12.1
(-2.2)
P 		22
avr 20.9
(3) 		7.8
(-3) 		11.1
(-1.5) 		10.3
(-1.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 19.8
(3)
A 		18.1
(2.1)
A 		9
(-2.4)
A 		9.5
(-2.2)
A 		8.9
(-2.5)
A 		7.9
(-3)
A 		12
B 20.2
(2.3)
A 		21.5
(3)
A 		11.1
(-3)
A 		17.3
(0.6)
A 		18.4
(1.2)
A 		14.4
(-1.1)
A 		10
C 21.8
(3)
A 		20.6
(2.5)
A 		9.1
(-2.5)
A 		8
(-3)
A 		12.3
(-1.1)
A 		21.7
(3)
M 		14
avr 20.6
(3) 		20.1
(2.7) 		9.7
(-3) 		11.6
(-2) 		13.2
(-1.1) 		14.7
(-0.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17795
Sequence Type Exemplar sequence
Representative Public ID C18B12.5 NCBI
Target Description C18B12.5 /REP_DB=WormBase Gene ID /WP=CE08309 /TR=Q93247 /GB=CAA20926.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078098 NCBI Caenorhabditis elegans C18B12.5 (C18B12.5) mRNA, complete cds. 11/11 None
SNAP00000043446 ENSEMBL cdna:SNAP chromosome:CEL140:X:15043004:15044499:-1 11/11 None
GENEFINDER00000043447 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15043004:15045269:-1 11/11 None
C18B12.5 ENSEMBL cdna:known chromosome:CEL140:X:15043004:15044499:-1 gene:C18B12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15043003-15044499(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B12.5
Entrez Gene 182775 Entrez gene
SwissProt Q93247 EMBL-EBI
WormBase CE08309 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20926 Hypothetical protein C18B12.5 [Caenorhabditis elegans] ref|NP_510499.1| C18B12.5 [Caenorhabditis elegans] 1.0E-164
blast CAB07228 Hypothetical protein H03G16.4 [Caenorhabditis elegans] ref|NP_510502.1| H03G16.4 [Caenorhabditis elegans] 3.0E-87
blast CAB07228 Hypothetical protein H03G16.4 [Caenorhabditis elegans] ref|NP_510502.1| H03G16.4 [Caenorhabditis elegans] 1.0E-74
blast AAC68938 Hypothetical protein T12B5.11 [Caenorhabditis elegans] ref|NP_497302.1| T12B5.11 [Caenorhabditis elegans] 2.0E-10
blast AAC68938 Hypothetical protein T12B5.11 [Caenorhabditis elegans] ref|NP_497302.1| T12B5.11 [Caenorhabditis elegans] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.6E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.6E-29
Sequence
Target Sequence 
>C. ELEGANS:180859_AT
aaattgtcttggcatcatcgatctggatttccaaggagcgaacccagatgttcatgacaa
gttttaccggatttttggagaacatgtggagagcatcaggaacatcactccaagacaagt
aaagttgcgctcctggaattgcaatgctgtggctttgtttctaaaattttgcaatgctga
tagtatttggcaacttgatataagcctggaaggagaagaagtggcgaattacgaccattt
tgttaatatgaaccaatggaaaaacgcgagtattttgaatctggattgcaagtatttacc
tgccgattttcatcaacatctttcaaagttcaaacatttggagattaaactagaatacat
atcaaatgaagatattgacaaaataaaaaagatgatctccgagccaaactctattatgaa
tggaaaattcaaaagctctacagctctcgatacttgttatattgcacgtatttttgacca
cattggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGTCTTGGCATCATCGATCTG 654 113 264 Antisense
GATTTCCAAGGAGCGAACCCAGATG 236 427 289 Antisense
GAGAGCATCAGGAACATCACTCCAA 371 395 352 Antisense
AGTAAAGTTGCGCTCCTGGAATTGC 562 59 381 Antisense
ATTGCAATGCTGTGGCTTTGTTTCT 625 5 401 Antisense
GTGGCGAATTACGACCATTTTGTTA 147 493 484 Antisense
GGATTGCAAGTATTTACCTGCCGAT 305 509 546 Antisense
TGCCGATTTTCATCAACATCTTTCA 589 583 564 Antisense
GATGATCTCCGAGCCAAACTCTATT 23 411 654 Antisense
AAGCTCTACAGCTCTCGATACTTGT 478 149 696 Antisense
TGCACGTATTTTTGACCACATTGGT 488 577 726 Antisense
Sequence Source Affymetrix Proprietary Database