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[180857_at] 7TM chemoreceptor, srw family

Description C44C3.5 /REP_DB=WormBase Gene ID /WP=CE08711 /TR=P91161 /GB=AAG23987.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 05      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 40.8
(1)
A 		12.1
(-3)
A 		40
(0.9)
A 		55
(3)
A 		43
B 32.1
(1.3)
A 		5.8
(-3)
A 		12.8
(-1.9)
A 		42.7
(3)
A 		37
C 29.7
(-0.9)
A 		29.9
(-0.9)
A 		9.5
(-3)
A 		68.5
(3)
P 		59
avr 34.2
(-0.2) 		15.9
(-3) 		20.8
(-2.3) 		55.4
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.2
(-3)
A 		6.9
(-2.2)
A 		3.3
(-2.8)
A 		31.3
(2.2)
A 		33.5
(2.6)
A 		35.6
(3)
A 		33
B 5.1
(-3)
A 		14.2
(-1)
A 		31.9
(3)
A 		5.2
(-3)
A 		13.3
(-1.2)
A 		30.3
(2.6)
A 		27
C 24.9
(3)
A 		18.6
(1.2)
A 		3.9
(-3)
A 		6.3
(-2.3)
A 		22.6
(2.3)
A 		21.8
(2.1)
A 		21
avr 10.7
(-3) 		13.2
(-2.2) 		13
(-2.3) 		14.3
(-1.8) 		23.1
(1) 		29.2
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.9
(3)
A 		2.6
(-3)
A 		10.5
(0.9)
A 		8.1
(-0.3)
A 		12
B 10.2
(3)
A 		1.4
(-3)
A 		3
(-1.9)
A 		9.1
(2.3)
A 		9
C 9.8
(1.7)
A 		8.6
(0.8)
A 		3.3
(-3)
A 		11.6
(3)
P 		8
avr 11.6
(3) 		4.2
(-3) 		5.6
(-1.9) 		9.6
(1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.5
(-1.7)
A 		0.7
(-2.8)
A 		7.9
(1.6)
A 		10.1
(3)
A 		8.7
(2.1)
A 		10
B 1.8
(-2.8)
A 		4.7
(-1)
A 		7.7
(0.8)
A 		1.4
(-3)
A 		5.4
(-0.6)
A 		11.3
(3)
A 		10
C 9.2
(3)
A 		5.7
(0.4)
A 		1
(-3)
A 		1.3
(-2.8)
A 		7.3
(1.6)
A 		7.3
(1.6)
A 		8
avr 3.8
(-2.3) 		4.3
(-1.8) 		3.1
(-3) 		3.5
(-2.6) 		7.6
(1.5) 		9.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15077
Sequence Type Exemplar sequence
Representative Public ID C44C3.5 NCBI
Target Description C44C3.5 /REP_DB=WormBase Gene ID /WP=CE08711 /TR=P91161 /GB=AAG23987.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071410 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-118) (srw-118) mRNA, complete cds. 11/11 None
GENEFINDER00000011854 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2978587:2983278:-1 10/11 None
C44C3.5 ENSEMBL cdna:known chromosome:CEL140:V:2978587:2979905:-1 gene:C44C3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011848 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2978586-2979905(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-118
Ensembl C44C3.5
Entrez Gene 183443 Entrez gene
SwissProt Q8IFY1 EMBL-EBI
WormBase CE08711 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73866 Serpentine receptor, class w protein 118 [Caenorhabditis elegans] ref|NP_503811.1| Serpentine Receptor, class W family member (srw-118) [Caenorhabditis elegans] 0.0
blast AAN73866 Serpentine receptor, class w protein 118 [Caenorhabditis elegans] ref|NP_503811.1| Serpentine Receptor, class W family member (srw-118) [Caenorhabditis elegans] 1.0E-173
blast AAN73867 Serpentine receptor, class w protein 117 [Caenorhabditis elegans] ref|NP_503812.1| Serpentine Receptor, class W family member (srw-117) [Caenorhabditis elegans] 1.0E-157
blast AAN73867 Serpentine receptor, class w protein 117 [Caenorhabditis elegans] ref|NP_503812.1| Serpentine Receptor, class W family member (srw-117) [Caenorhabditis elegans] 1.0E-131
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 1.0E-126
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503811.1 7 38-60,69-91,126-143,155-177,221-243,271-293,308-330
C44C3.5 7 38-60,69-91,126-143,155-177,221-243,271-293,308-330
GENEFINDER00000011854 13 38-60,127-144,159-178,185-207,227-249,273-295,305-324,378-397,469-491,534-551,608-630,658-680,695-717
Sequence
Target Sequence 
>C. ELEGANS:180857_AT
aagcctgcccatttcaatgttcaaattttttgaagttcagtttgaaaagagcccgagcta
ccatacttgtgctccaaaaggaacgtattacattgctactatgtcacactttttcatgaa
aaaccacgggtttctagcaaaatattataatttgttcaattcaattgtgtcagacatagt
tccatgtatactgctgccattcgtaactttattacttgttatggatttatggaaaacagc
taagaaaagaccaaatattatttctgtaagtaagagcaatatttctcggagcaaaaccgg
attagtcttctgcgtaactatcacgtttttcattgtcgagtttccttatggattgagcat
tgggttctcatggatgtttcacaatgtattaggattgcatcgcatagtcgcatactttgg
acacattttttcaatgttaataactttaaacacttgcactcatatgattgtttgtctact
tctatcttcccaatatcgagggtcaatgattgacgtcctgtcatgtggatacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTGCCCATTTCAATGTTCAAA 382 149 522 Antisense
GCCCGAGCTACCATACTTGTGCTCC 617 285 572 Antisense
ATTGCTACTATGTCACACTTTTTCA 133 7 613 Antisense
ATAGTTCCATGTATACTGCTGCCAT 73 23 697 Antisense
ACTGCTGCCATTCGTAACTTTATTA 402 97 711 Antisense
AACCGGATTAGTCTTCTGCGTAACT 127 145 816 Antisense
GAGCATTGGGTTCTCATGGATGTTT 222 389 876 Antisense
GGATTGCATCGCATAGTCGCATACT 578 507 913 Antisense
GCACTCATATGATTGTTTGTCTACT 126 317 977 Antisense
TACTTCTATCTTCCCAATATCGAGG 300 645 998 Antisense
TGACGTCCTGTCATGTGGATACATC 285 571 1032 Antisense
Sequence Source Affymetrix Proprietary Database