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[180856_at]

Description C11D9.1 /REP_DB=WormBase Gene ID /WP=CE08100 /TR=O01847 /GB=AAB54205.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 04      4grp_total > 46      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 349.6
(3)
P 		242.8
(-2)
P 		241.5
(-2)
P 		220.5
(-3)
P 		129
B 416.9
(3)
P 		258.8
(-0.9)
P 		175.7
(-3)
P 		237.6
(-1.5)
P 		241
C 351
(3)
P 		252.8
(-2.6)
P 		263
(-2)
P 		245.3
(-3)
P 		106
avr 372.5
(3) 		251.5
(-2) 		226.7
(-3) 		234.5
(-2.7) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 548.1
(3)
P 		399.8
(0.2)
P 		236.3
(-2.9)
P 		349.7
(-0.7)
P 		303.4
(-1.6)
P 		229
(-3)
P 		319
B 415.1
(3)
P 		416.4
(3)
P 		275.3
(-0.8)
P 		315.9
(0.3)
P 		287.7
(-0.5)
P 		194.8
(-3)
P 		222
C 313.9
(1.2)
P 		356.6
(3)
P 		336.8
(2.1)
P 		357.2
(3)
P 		350.3
(2.7)
P 		213.7
(-3)
P 		144
avr 425.7
(3) 		390.9
(2) 		282.8
(-1) 		340.9
(0.6) 		313.8
(-0.1) 		212.5
(-3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 127.3
(3)
P 		52.7
(-1.7)
P 		63.1
(-1.1)
P 		32.3
(-3)
P 		95
B 133
(3)
P 		63.9
(-1.5)
P 		40.7
(-3)
P 		50.6
(-2.4)
P 		92
C 116.2
(3)
P 		72.7
(-0.5)
P 		91.7
(1)
P 		41.4
(-3)
P 		75
avr 125.5
(3) 		63.1
(-1.5) 		65.2
(-1.3) 		41.4
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 101
(0.3)
P 		142.2
(3)
P 		51.5
(-3)
P 		88.7
(-0.5)
P 		91.6
(-0.3)
P 		55.8
(-2.7)
P 		91
B 144.4
(3)
P 		138.6
(2.6)
P 		66.9
(-3)
P 		83.7
(-1.7)
P 		116.9
(0.9)
P 		72.7
(-2.6)
P 		78
C 116.4
(3)
P 		108.8
(2)
P 		85.7
(-1.1)
P 		71.8
(-3)
P 		113.4
(2.6)
P 		71.5
(-3)
P 		45
avr 120.6
(2.1) 		129.9
(3) 		68
(-2.9) 		81.4
(-1.6) 		107.3
(0.9) 		66.7
(-3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1649
Sequence Type Exemplar sequence
Representative Public ID C11D9.1 NCBI
Target Description C11D9.1 /REP_DB=WormBase Gene ID /WP=CE08100 /TR=O01847 /GB=AAB54205.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058966 NCBI Caenorhabditis elegans C11D9.1 (C11D9.1) mRNA, complete cds. 11/11 A 
SNAP00000002064 ENSEMBL cdna:SNAP chromosome:CEL140:I:4423041:4428007:1 11/11 None
GENEFINDER00000002074 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4423041:4426056:1 11/11 None
C11D9.1 ENSEMBL cdna:known chromosome:CEL140:I:4422033:4426138:1 gene:C11D9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4421795-4426056(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11D9.1
Entrez Gene 259373 Entrez gene
SwissProt O01847 EMBL-EBI
WormBase CE37706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54205 Hypothetical protein C11D9.1 [Caenorhabditis elegans] ref|NP_491367.2| C11D9.1 [Caenorhabditis elegans] 0.0
blast CAE66830 Hypothetical protein CBG12200 [Caenorhabditis briggsae] 0.0
blast AAH79600 Tiam2 protein [Mus musculus] 2.0E-25
blast AAH79600 Tiam2 protein [Mus musculus] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000219 EMBL-EBI DH domain 1.0E-13
Pfam IPR000219 EMBL-EBI DH domain 1.0E-13
Pfam IPR000219 EMBL-EBI DH domain 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:180856_AT
aaaacattgccgatgcacttccgaaggatgcacgagagagggttcaagtggaggcagcat
tgcaaaaaatgcagacgtctgcagaatatgtgaatgaaatgcaaaggcttcatgaagatt
atgcacaatatatggagactgttaggaaagctaatgagccaatgttggctgaaaagagtc
ttcgcctcgacactcgagagcttctagtttttgcacacataaaatggagagatgctccag
cggagcactacgttgtgttcgtgtttcactctttaatactgctccttccatcgtatgcta
ggaaagagattaagatgaaatggactcgtgtcctcccaataaatgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACATTGCCGATGCACTTCCGAA 668 129 1427 Antisense
GATGCACTTCCGAAGGATGCACGAG 352 411 1438 Antisense
GAGAGGGTTCAAGTGGAGGCAGCAT 360 395 1462 Antisense
GGCTGAAAAGAGTCTTCGCCTCGAC 574 539 1593 Antisense
TCGCCTCGACACTCGAGAGCTTCTA 316 599 1608 Antisense
CTCCAGCGGAGCACTACGTTGTGTT 173 235 1661 Antisense
ACGTTGTGTTCGTGTTTCACTCTTT 218 95 1676 Antisense
GTTTCACTCTTTAATACTGCTCCTT 23 451 1689 Antisense
TGCTCCTTCCATCGTATGCTAGGAA 651 581 1706 Antisense
GATGAAATGGACTCGTGTCCTCCCA 605 409 1740 Antisense
ACTCGTGTCCTCCCAATAAATGAAG 483 99 1750 Antisense
Sequence Source Affymetrix Proprietary Database