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[180855_s_at]

Description C52B9.7 /REP_DB=WormBase Gene ID /WP=CE06966 /GEN=paf-2 /GB=AAK39216.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 98      6grp_total > 58      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 38      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2518
1 2 3 4 range
A 972.9
(-3)
P 		1029.1
(-2.8)
P 		1068.2
(-2.7)
P 		3140.4
(3)
P 		2168
B 945.7
(-3)
P 		1051.3
(-2.7)
P 		1044.6
(-2.8)
P 		3463.2
(3)
P 		2518
C 947.5
(-3)
P 		1089.6
(-2.6)
P 		1147.6
(-2.4)
P 		2988.1
(3)
P 		2041
avr 955.4
(-3) 		1056.7
(-2.7) 		1086.8
(-2.6) 		3197.2
(3) 		2242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1958
1 2 3 4 5 6 range
A 1447.4
(-0)
P 		696.8
(-2.9)
P 		709
(-2.9)
P 		677.5
(-3)
P 		676.3
(-3)
P 		2237.8
(3)
P 		1562
B 1315.3
(-0.7)
P 		684.8
(-2.9)
P 		691.2
(-2.9)
P 		732.2
(-2.8)
P 		661.7
(-3)
P 		2399.3
(3)
P 		1738
C 1046.3
(-1.5)
P 		796.8
(-2.3)
P 		713.1
(-2.5)
P 		707.2
(-2.6)
P 		565.3
(-3)
P 		2523.3
(3)
P 		1958
avr 1269.7
(-0.8) 		726.1
(-2.7) 		704.4
(-2.8) 		705.6
(-2.8) 		634.4
(-3) 		2386.8
(3) 		1752
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 515
1 2 3 4 range
A 354.2
(0.3)
P 		223.4
(-3)
P 		279.2
(-1.6)
P 		459.7
(3)
P 		236
B 301.6
(-2.3)
P 		259.6
(-2.8)
P 		242.1
(-3)
P 		738
(3)
P 		496
C 313.7
(-3)
P 		313.3
(-3)
P 		400
(-0.3)
P 		503.8
(3)
P 		191
avr 323.2
(-1.9) 		265.4
(-3) 		307.1
(-2.2) 		567.2
(3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 753
1 2 3 4 5 6 range
A 266.8
(-1.3)
P 		247.8
(-1.6)
P 		154.4
(-3)
P 		171.8
(-2.7)
P 		204.1
(-2.2)
P 		544.8
(3)
P 		390
B 457.7
(-0.6)
P 		228
(-2.5)
P 		167.9
(-3)
P 		193.9
(-2.8)
P 		268.8
(-2.2)
P 		894.7
(3)
P 		727
C 387.8
(-0.9)
P 		243.1
(-2.1)
P 		181.5
(-2.7)
P 		142.2
(-3)
P 		182.9
(-2.7)
P 		844.7
(3)
P 		703
avr 370.8
(-0.9) 		239.6
(-2.3) 		167.9
(-3) 		169.3
(-3) 		218.6
(-2.5) 		761.4
(3) 		594
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180855_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17113
Sequence Type Exemplar sequence
Representative Public ID C52B9.7 NCBI
Target Description C52B9.7 /REP_DB=WormBase Gene ID /WP=CE06966 /GEN=paf-2 /GB=AAK39216.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171668 NCBI Caenorhabditis elegans PAF-acetylhydrolase family member (paf-2) (paf-2) mRNA, complete cds. 11/11 None
SNAP00000014557 ENSEMBL cdna:SNAP chromosome:CEL140:X:4291547:4294317:-1 11/11 None
GENEFINDER00000014570 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4291547:4294317:-1 11/11 None
C52B9.7a ENSEMBL cdna:known chromosome:CEL140:X:4291459:4294324:-1 gene:C52B9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180704 2 1 NM_171668 180855_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4291547-4294690(-) 99.23 100.0
Public Domain and Genome References
Ensembl C52B9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL57290 PAF-2 [Caenorhabditis elegans] ref|NP_741768.1| PAF-acetylhydrolase family member (paf-2) [Caenorhabditis elegans] gb|AAL65779.1| Paf-acetylhydrolase protein 2, isoform a [Caenorhabditis elegans] sp|Q22943|PAFA_CAEEL Platelet-activating factor acetylhydrolase homolog 0.0
blast T28936 hypothetical protein C52B9.7 - Caenorhabditis elegans 0.0
blast CAE68556 Hypothetical protein CBG14389 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005065 EMBL-EBI Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II 1.0E-126
Pfam IPR005065 EMBL-EBI Platelet-activating factor acetylhydrolase, plasma/intracellular isoform II 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180855_S_AT
tcaccgaatgtgtcaaggctctcaatgtgttggaacaacttaacctgggaactgtccccg
agaaagttttgattggaaatgattacaactgggcacaattcaagaataagttggtcatgt
catccgcttctgtcattggacattcatttggcggcgcaacatctttggcatcatccgcct
acacaacggacttccaaaaagcaattgttttcgatggctggatgtacccactggactcaa
ctcaacaagagcaagcgaagcagccaacgctgtttttgaatgttggagattggcagtgga
atgagaatttggacgttatgaaaaaaatcatctcacacaatgatgggaatcttgcgttga
ctttgaatggtgcggtgcatcaatgcttctccgattttccattcattttcccatcgtggc
tcgcaaagaaatttggagttcagggccgaacggaaccatcattgtgcatgcaagctgcca
tcgaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCGAATGTGTCAAGGCTCTCAA 304 625 845 Antisense
ATAAGTTGGTCATGTCATCCGCTTC 147 25 950 Antisense
CATCCGCTTCTGTCATTGGACATTC 675 211 965 Antisense
TTGGACATTCATTTGGCGGCGCAAC 469 705 980 Antisense
GCGCAACATCTTTGGCATCATCCGC 98 289 998 Antisense
ATCATCCGCCTACACAACGGACTTC 680 27 1014 Antisense
TCGATGGCTGGATGTACCCACTGGA 63 603 1055 Antisense
GAATGGTGCGGTGCATCAATGCTTC 355 333 1209 Antisense
TTTTCCCATCGTGGCTCGCAAAGAA 137 677 1250 Antisense
GGCCGAACGGAACCATCATTGTGCA 546 541 1288 Antisense
GTGCATGCAAGCTGCCATCGAACTT 518 479 1308 Antisense
Sequence Source Affymetrix Proprietary Database