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[180854_at]

Description R12E2.6 /REP_DB=WormBase Gene ID /WP=CE18138 /TR=O61783 /GB=AAC17027.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 11.7
(-3)
A 		12.3
(-2.7)
A 		24.3
(3)
A 		20.5
(1.2)
A 		13
B 13.9
(2.1)
A 		14.6
(3)
A 		10.6
(-2)
A 		9.8
(-3)
A 		5
C 10.1
(-3)
A 		20.2
(-1.2)
A 		13.1
(-2.5)
A 		43.8
(3)
A 		34
avr 11.9
(-3) 		15.7
(-1.2) 		16
(-1.1) 		24.7
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 12
(2)
A 		11.7
(1.8)
A 		6.7
(-3)
A 		10.5
(0.6)
A 		11.1
(1.2)
A 		13
(3)
A 		6
B 7.2
(-3)
A 		11.3
(1.9)
A 		7.8
(-2.3)
A 		12.2
(3)
A 		9
(-0.8)
A 		11.7
(2.4)
A 		5
C 11.1
(-0.3)
A 		8.6
(-2.4)
A 		11.5
(0.1)
A 		11.3
(-0.1)
A 		14.9
(3)
A 		7.9
(-3)
A 		7
avr 10.1
(-0.2) 		10.5
(0.6) 		8.7
(-3) 		11.3
(2.2) 		11.7
(3) 		10.9
(1.4) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.3
(-0.3)
A 		2.7
(-3)
A 		6.3
(3)
A 		3
(-2.5)
A 		4
B 4.4
(3)
A 		3.6
(0.9)
A 		2.4
(-2.2)
A 		2.1
(-3)
A 		2
C 3.4
(-3)
A 		5.8
(0.6)
A 		4.6
(-1.2)
A 		7.4
(3)
A 		4
avr 4
(-3) 		4
(-3) 		4.4
(3) 		4.2
(0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.2
(-1.4)
A 		4.1
(3)
A 		1.5
(-3)
A 		2.7
(-0.2)
A 		3.3
(1.2)
A 		3.2
(0.9)
A 		3
B 2.5
(-1.6)
A 		3.8
(1.6)
A 		1.9
(-3)
A 		3.2
(0.1)
A 		3.7
(1.3)
A 		4.4
(3)
A 		3
C 4.1
(1.3)
A 		2.6
(-2.3)
A 		2.9
(-1.6)
A 		2.3
(-3)
A 		4.8
(3)
A 		2.7
(-2)
A 		3
avr 2.9
(-0.3) 		3.5
(1.7) 		2.1
(-3) 		2.7
(-1) 		3.9
(3) 		3.4
(1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180854_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.417
Sequence Type Exemplar sequence
Representative Public ID R12E2.6 NCBI
Target Description R12E2.6 /REP_DB=WormBase Gene ID /WP=CE18138 /TR=O61783 /GB=AAC17027.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058909 NCBI Caenorhabditis elegans R12E2.6 (R12E2.6) mRNA, complete cds. 11/11 None
SNAP00000012675 ENSEMBL cdna:SNAP chromosome:CEL140:I:4151209:4151747:-1 11/11 None
GENEFINDER00000012693 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4151209:4151747:-1 11/11 None
R12E2.6 ENSEMBL cdna:known chromosome:CEL140:I:4151209:4151747:-1 gene:R12E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4151208-4151747(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R12E2.6
Entrez Gene 187842 Entrez gene
SwissProt O61783 EMBL-EBI
WormBase CE18138 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:180854_AT
tgcctgcttcggtggagcaactcaaaattcatgctgtcctccaccacagtgctgtggtcc
acctccagcgtgtggaaatccatgcggaggaggattcggaccaccaccaccaccattcgg
tccagttggatatgctctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTGCTTCGGTGGAGCAACTCAA 567 583 57 Antisense
GCTTCGGTGGAGCAACTCAAAATTC 687 303 62 Antisense
AACTCAAAATTCATGCTGTCCTCCA 327 141 75 Antisense
TGTCCTCCACCACAGTGCTGTGGTC 131 557 91 Antisense
CACCACAGTGCTGTGGTCCACCTCC 441 199 98 Antisense
TGGTCCACCTCCAGCGTGTGGAAAT 7 553 111 Antisense
CCACCTCCAGCGTGTGGAAATCCAT 246 271 115 Antisense
TCCAGCGTGTGGAAATCCATGCGGA 270 589 120 Antisense
ATCCATGCGGAGGAGGATTCGGACC 607 39 134 Antisense
ACCACCATTCGGTCCAGTTGGATAT 25 85 165 Antisense
TCGGTCCAGTTGGATATGCTCTCCC 194 607 173 Antisense
Sequence Source Affymetrix Proprietary Database