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[180853_at]

Description E02D9.2 /REP_DB=WormBase Gene ID /WP=CE17624 /TR=Q9TYV6 /GB=AAC78160.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 22      6grp_total > 23      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1920
1 2 3 4 range
A 2767
(3)
P 		1877.8
(0.2)
P 		846.7
(-3)
P 		1635.7
(-0.5)
P 		1920
B 2456.4
(3)
P 		1377.9
(-1.1)
P 		861
(-3)
P 		2066.1
(1.5)
P 		1595
C 2755.4
(3)
P 		1440
(-1.5)
P 		1013.5
(-3)
P 		1843.2
(-0.1)
P 		1742
avr 2659.6
(3) 		1565.2
(-0.7) 		907.1
(-3) 		1848.3
(0.2) 		1753

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 981
1 2 3 4 5 6 range
A 1945.9
(3)
P 		1718.5
(1.6)
P 		1870.3
(2.5)
P 		1281
(-1.1)
P 		1077.7
(-2.3)
P 		964.8
(-3)
P 		981
B 1602.4
(2.9)
P 		1595.6
(2.8)
P 		1614.8
(3)
P 		1561.2
(2.4)
P 		1055.8
(-3)
P 		1225.6
(-1.2)
P 		559
C 1915.3
(3)
P 		1883.8
(2.8)
P 		1382.7
(-1)
P 		1634
(0.9)
P 		1107
(-3)
P 		1248.3
(-2)
P 		808
avr 1821.2
(3) 		1732.6
(2.3) 		1622.6
(1.4) 		1492.1
(0.3) 		1080.2
(-3) 		1146.2
(-2.5) 		741
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 808
1 2 3 4 range
A 1007.5
(3)
P 		407.6
(-1.6)
P 		221.3
(-3)
P 		239.4
(-2.9)
P 		786
B 783.3
(3)
P 		340.3
(-1.6)
P 		199.5
(-3)
P 		440.3
(-0.5)
P 		584
C 912.1
(3)
P 		414
(-2)
P 		353.2
(-2.6)
P 		310.8
(-3)
P 		601
avr 901
(3) 		387.3
(-1.8) 		258
(-3) 		330.2
(-2.3) 		643

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 358.7
(-1)
P 		611.2
(3)
P 		407.3
(-0.3)
P 		324.9
(-1.6)
P 		325.2
(-1.6)
P 		234.9
(-3)
P 		376
B 557.6
(3)
P 		531.1
(2)
P 		392.1
(-3)
P 		413.5
(-2.2)
P 		429
(-1.7)
P 		457
(-0.6)
P 		166
C 709.9
(3)
P 		574.8
(0.9)
P 		351.9
(-2.6)
P 		328.6
(-3)
P 		358.2
(-2.5)
P 		417.9
(-1.6)
P 		381
avr 542.1
(2.2) 		572.4
(3) 		383.8
(-2.2) 		355.7
(-3) 		370.8
(-2.6) 		369.9
(-2.6) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1845
Sequence Type Exemplar sequence
Representative Public ID E02D9.2 NCBI
Target Description E02D9.2 /REP_DB=WormBase Gene ID /WP=CE17624 /TR=Q9TYV6 /GB=AAC78160.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059550 NCBI Caenorhabditis elegans K02F2.5 (K02F2.5) mRNA, complete cds. 11/11 A 
SNAP00000018471 ENSEMBL cdna:SNAP chromosome:CEL140:I:6813199:6816049:-1 11/11 None
GENEFINDER00000018483 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6813199:6818441:-1 11/11 None
K02F2.5 ENSEMBL cdna:known chromosome:CEL140:I:6812921:6818511:-1 gene:K02F2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6813129-6813723(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F2.5
Entrez Gene 183992 Entrez gene
SwissProt O44983 EMBL-EBI
WormBase CE31353 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97563 Hypothetical protein K02F2.5 [Caenorhabditis elegans] ref|NP_491951.2| K02F2.5 [Caenorhabditis elegans] 7.0E-77
blast AAB97563 Hypothetical protein K02F2.5 [Caenorhabditis elegans] ref|NP_491951.2| K02F2.5 [Caenorhabditis elegans] 9.0E-72
blast CAE67308 Hypothetical protein CBG12763 [Caenorhabditis briggsae] 3.0E-66
blast CAE67308 Hypothetical protein CBG12763 [Caenorhabditis briggsae] 5.0E-64
blast T33802 hypothetical protein E02D9.2 - Caenorhabditis elegans 1.0E-26
blast T33802 hypothetical protein E02D9.2 - Caenorhabditis elegans 2.0E-26
Sequence
Target Sequence 
>C. ELEGANS:180853_AT
tcaactggcagttctcgcggaaatcgtacaaaatgaaattgatcaatacaatccagaatc
agttgaagcttacgaagttattgaattaccagaatattgtaataacccaaccaattgaat
acatgccacgtgatcgtcgttccgttccagtatttgaggcttatgatgaaaatgatctac
cggaacaatttgaagaaaatcaagaggtaatctttgtgccagaagaagcacttatcgaag
ccgctgcagaagaacaagatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTGGCAGTTCTCGCGGAAATC 377 631 17 Antisense
GGCAGTTCTCGCGGAAATCGTACAA 368 535 23 Antisense
AGCTTACGAAGTTATTGAATTACCA 196 77 83 Antisense
AACCCAACCAATTGAATACATGCCA 241 145 120 Antisense
ATACATGCCACGTGATCGTCGTTCC 668 17 135 Antisense
CGTCGTTCCGTTCCAGTATTTGAGG 10 247 151 Antisense
TCCGTTCCAGTATTTGAGGCTTATG 57 595 157 Antisense
AATGATCTACCGGAACAATTTGAAG 267 163 187 Antisense
ATCAAGAGGTAATCTTTGTGCCAGA 96 27 215 Antisense
AGAAGCACTTATCGAAGCCGCTGCA 650 73 240 Antisense
AAGCCGCTGCAGAAGAACAAGATGA 43 149 254 Antisense
Sequence Source Affymetrix Proprietary Database