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[180852_at]

Description F30A10.2 /REP_DB=WormBase Gene ID /WP=CE09803 /TR=Q93642 /GB=CAB03021.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 7.8
(-2.8)
A 		30.2
(1.1)
A 		41.2
(3)
A 		6.9
(-3)
A 		34
B 2.3
(-3)
A 		134.3
(3)
A 		3.3
(-3)
A 		32.9
(-1.6)
A 		132
C 2.4
(-3)
A 		68.3
(3)
A 		45.1
(0.9)
A 		41.1
(0.5)
A 		66
avr 4.2
(-3) 		77.6
(3) 		29.9
(-0.9) 		27
(-1.1) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 3
(-3)
A 		6.6
(-2.8)
A 		46.3
(-1.1)
A 		53.5
(-0.8)
A 		138.2
(3)
P 		49.8
(-0.9)
A 		135
B 4.2
(-3)
A 		11.6
(-2.8)
A 		71.4
(-0.9)
A 		59.7
(-1.3)
A 		194.5
(3)
P 		48.9
(-1.6)
A 		190
C 3.9
(-3)
A 		22.9
(-2.5)
A 		32.4
(-2.2)
A 		10.7
(-2.8)
A 		222.1
(3)
P 		59
(-1.5)
A 		218
avr 3.7
(-3) 		13.7
(-2.7) 		50
(-1.5) 		41.3
(-1.8) 		184.9
(3) 		52.6
(-1.4) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.8
(-1.9)
A 		6.6
(0.4)
A 		10.8
(3)
A 		1
(-3)
A 		10
B 0.7
(-3)
A 		33.2
(3)
A 		0.8
(-3)
A 		7
(-1.8)
A 		33
C 0.8
(-3)
A 		19.6
(3)
A 		15.7
(1.8)
A 		6.9
(-1.1)
A 		19
avr 1.4
(-3) 		19.8
(3) 		9.1
(-0.5) 		5
(-1.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.4
(-2.7)
A 		10.1
(-1.6)
A 		13.6
(-1.1)
A 		41.7
(3)
P 		12.1
(-1.3)
A 		41
B 1.5
(-3)
A 		3.9
(-2.8)
A 		17.3
(-1.8)
A 		15.8
(-1.9)
A 		79
(3)
P 		18.2
(-1.7)
A 		78
C 1.4
(-3)
A 		7
(-2.5)
A 		8.2
(-2.4)
A 		2.1
(-2.9)
A 		71.9
(3)
P 		19.7
(-1.4)
A 		71
avr 1.1
(-3) 		4.4
(-2.7) 		11.9
(-2) 		10.5
(-2.1) 		64.2
(3) 		16.7
(-1.5) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180852_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1193
Sequence Type Exemplar sequence
Representative Public ID F30A10.2 NCBI
Target Description F30A10.2 /REP_DB=WormBase Gene ID /WP=CE09803 /TR=Q93642 /GB=CAB03021.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060114 NCBI Caenorhabditis elegans F30A10.2 (F30A10.2) mRNA, complete cds. 11/11 None
F30A10.2 ENSEMBL cdna:known chromosome:CEL140:I:9486626:9488718:-1 gene:F30A10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021987 7/11 Cross Hyb Matching Probes None
SNAP00000021988 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022003 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9486556-9488594(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F30A10.2
Entrez Gene 172776 Entrez gene
SwissProt Q93642 EMBL-EBI
WormBase CE09803 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03021 Hypothetical protein F30A10.2 [Caenorhabditis elegans] ref|NP_492515.1| F30A10.2 [Caenorhabditis elegans] 1.0E-170
blast CAE74234 Hypothetical protein CBG21919 [Caenorhabditis briggsae] 3.0E-54
blast CAE57023 Hypothetical protein CBG24899 [Caenorhabditis briggsae] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:180852_AT
aacttccagaaaaccttgcaattagcgaagatcggaagaagaagttcaaagagacatgtc
ggtgcttataaaccaaaagttatctcatttgatggaacagctcgtgttaataagcaacat
gctagagctcatgcaagtccaacttcaattggtctgaatccaatcaagacttatgcttac
ggctcttcctcttctcaaaatcgtggcccagattttgatccgtgggagagaatgggacag
aaagccttatgcaacttgttaggtacattgttactagagctagagcgcatatgggagcat
atgggtggatttattgacaccgaatcgccagcgttttttgttaatgaaactttggctcaa
caacatatagcatgtgtcttctgtaataaattattcaatatgccacaaacctgggagaag
gctcaaaacgccctcaaccttgccggatgctcaaaccttggaggagcaaaaaaagcttgc
aatggaattgttaataatgcaaatttaacagaatcatttcctaatatgttacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCCAGAAAACCTTGCAATTAG 249 139 436 Antisense
GAGACATGTCGGTGCTTATAAACCA 520 391 486 Antisense
TCTCATTTGATGGAACAGCTCGTGT 528 611 518 Antisense
GACAGAAAGCCTTATGCAACTTGTT 174 367 671 Antisense
TATTGACACCGAATCGCCAGCGTTT 134 663 747 Antisense
GAATCGCCAGCGTTTTTTGTTAATG 701 329 757 Antisense
TAGCATGTGTCTTCTGTAATAAATT 46 653 803 Antisense
AATTATTCAATATGCCACAAACCTG 258 175 824 Antisense
GGAGAAGGCTCAAAACGCCCTCAAC 435 517 849 Antisense
TGCCGGATGCTCAAACCTTGGAGGA 459 585 876 Antisense
GAATCATTTCCTAATATGTTACCTC 41 329 946 Antisense
Sequence Source Affymetrix Proprietary Database