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[180851_at]

Description Y37A1B.4 /REP_DB=WormBase Gene ID /WP=CE19074 /TR=Q9XXG0 /GB=CAA19489.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 2.9
(-2.5)
A 		17.5
(3)
A 		1.7
(-3)
A 		7.4
(-0.8)
A 		16
B 6.8
(-1.2)
A 		19.7
(3)
A 		1.2
(-3)
A 		3.7
(-2.2)
A 		19
C 17.4
(-0.6)
A 		5.6
(-2.4)
A 		1.5
(-3)
A 		41.4
(3)
A 		40
avr 9
(-0.2) 		14.3
(1.8) 		1.5
(-3) 		17.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.4
(-2.4)
A 		12.9
(3)
A 		12.5
(2.8)
A 		1.3
(-3)
A 		10.2
(1.6)
A 		1.9
(-2.7)
A 		12
B 1.4
(-2.8)
A 		2.1
(-2.2)
A 		7.9
(3)
A 		1.2
(-3)
A 		2.8
(-1.6)
A 		1.4
(-2.8)
A 		7
C 0.9
(-2.7)
A 		2.1
(-1.1)
A 		5.2
(3)
A 		0.8
(-2.9)
A 		1.6
(-1.8)
A 		0.7
(-3)
A 		5
avr 1.6
(-2.6) 		5.7
(0.7) 		8.5
(3) 		1.1
(-3) 		4.9
(0.1) 		1.3
(-2.8) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(-1.8)
A 		3.8
(3)
A 		0.4
(-3)
A 		1.1
(-1.8)
A 		3
B 2.2
(-0.5)
A 		4.9
(3)
A 		0.3
(-3)
A 		0.8
(-2.3)
A 		5
C 5.8
(1.9)
A 		1.6
(-2)
A 		0.5
(-3)
A 		7
(3)
A 		7
avr 3
(2.2) 		3.4
(3) 		0.4
(-3) 		3
(2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		4.6
(3)
A 		2.7
(0.3)
A 		0.3
(-3)
A 		3.1
(0.9)
A 		0.5
(-2.7)
A 		4
B 0.5
(-2.3)
A 		0.7
(-1.5)
A 		1.9
(3)
A 		0.3
(-3)
A 		1.1
(0)
A 		0.5
(-2.3)
A 		2
C 0.3
(-2.5)
A 		0.7
(-0.3)
A 		1.3
(3)
A 		0.2
(-3)
A 		0.5
(-1.4)
A 		0.2
(-3)
A 		1
avr 0.4
(-2.6) 		2
(3) 		2
(3) 		0.3
(-3) 		1.6
(1.6) 		0.4
(-2.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180851_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9214
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.4 NCBI
Target Description Y37A1B.4 /REP_DB=WormBase Gene ID /WP=CE19074 /TR=Q9XXG0 /GB=CAA19489.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070291 NCBI Caenorhabditis elegans Y37A1B.4 (Y37A1B.4) mRNA, complete cds. 11/11 None
GENEFINDER00000004238 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14059431:14060191:-1 9/11 None
Y37A1B.4 ENSEMBL cdna:known chromosome:CEL140:IV:14059536:14059990:-1 gene:Y37A1B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004226 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14059541-14059996(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37A1B.4
Entrez Gene 189600 Entrez gene
SwissProt Q9XXG0 EMBL-EBI
WormBase CE19074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19489 Hypothetical protein Y37A1B.4 [Caenorhabditis elegans] ref|NP_502692.1| Y37A1B.4 [Caenorhabditis elegans] 4.0E-50
blast CAA19489 Hypothetical protein Y37A1B.4 [Caenorhabditis elegans] ref|NP_502692.1| Y37A1B.4 [Caenorhabditis elegans] 4.0E-37
Sequence
Target Sequence 
>C. ELEGANS:180851_AT
aaagcggaatttggactgtatagtgcaacaggtggaagggtgcttgtttggctggaacaa
atccacgttcaacctctggaacttttgagcaccgatgaacgcattcgacgtcaatcgatt
ggagtaacgatattatggaataacatattggtgatgattcagtgtgatggaaacatcttg
ccccaaaagcaccaaggtttttatcgatttcattgtgagtttcaacagcgttcacttcac
acg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCGGAATTTGGACTGTATAGTG 45 125 19 Antisense
GGAAGGGTGCTTGTTTGGCTGGAAC 676 531 52 Antisense
GGCTGGAACAAATCCACGTTCAACC 48 541 68 Antisense
AATCCACGTTCAACCTCTGGAACTT 80 167 78 Antisense
ACCTCTGGAACTTTTGAGCACCGAT 227 87 90 Antisense
GAGCACCGATGAACGCATTCGACGT 640 389 105 Antisense
GAACGCATTCGACGTCAATCGATTG 60 347 115 Antisense
GGAAACATCTTGCCCCAAAAGCACC 108 529 187 Antisense
AGCACCAAGGTTTTTATCGATTTCA 322 77 206 Antisense
ATCGATTTCATTGTGAGTTTCAACA 560 35 221 Antisense
GTTTCAACAGCGTTCACTTCACACG 604 449 237 Antisense
Sequence Source Affymetrix Proprietary Database