[Home] | [Total List]

[180850_at] 7TM chemoreceptor, srab family

Description T20D4.2 /REP_DB=WormBase Gene ID /WP=CE13782 /TR=P91474 /GB=AAB37596.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 24      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 7.8
(-3)
A 		43.4
(3)
A 		42.1
(2.8)
A 		37.2
(2)
A 		36
B 5.6
(-2.9)
A 		15.5
(-1.5)
A 		46.8
(3)
A 		4.7
(-3)
A 		42
C 27.1
(-1.6)
A 		6.2
(-3)
A 		38.9
(-0.8)
A 		94.2
(3)
P 		88
avr 13.5
(-3) 		21.7
(-1.5) 		42.6
(2.5) 		45.4
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 12.6
(0.3)
A 		4.5
(-2.1)
A 		8.1
(-1)
A 		1.4
(-3)
A 		22
(3)
A 		18.1
(1.9)
A 		21
B 14
(-1)
A 		27.4
(1)
A 		40.4
(3)
A 		2.3
(-2.8)
A 		2.5
(-2.8)
A 		1
(-3)
A 		39
C 10.2
(-1.7)
A 		39.9
(3)
A 		19.1
(-0.3)
A 		1.9
(-3)
A 		4.4
(-2.6)
A 		2.3
(-2.9)
A 		38
avr 12.3
(-0.2) 		23.9
(3) 		22.5
(2.6) 		1.9
(-3) 		9.6
(-0.9) 		7.1
(-1.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.8
(-3)
A 		9.4
(1.8)
A 		11
(3)
A 		5.5
(-1)
A 		8
B 1.8
(-2.5)
A 		3.8
(-1.3)
A 		10.9
(3)
A 		1
(-3)
A 		10
C 9
(0.1)
A 		1.8
(-3)
A 		13.5
(2)
A 		15.9
(3)
P 		14
avr 4.5
(-3) 		5
(-2.6) 		11.8
(3) 		7.5
(-0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.3
(-1.2)
A 		1.6
(-1.8)
A 		1.8
(-1.6)
A 		0.4
(-3)
A 		6.6
(3)
A 		4.4
(0.9)
A 		6
B 4.9
(-0.1)
A 		9.1
(2.6)
A 		9.8
(3)
A 		0.6
(-2.9)
A 		1
(-2.6)
A 		0.4
(-3)
A 		9
C 3.8
(-1.3)
A 		12.2
(3)
A 		4.9
(-0.7)
A 		0.4
(-3)
A 		1.4
(-2.5)
A 		0.8
(-2.8)
A 		12
avr 3.7
(-0.3) 		7.6
(3) 		5.5
(1.2) 		0.5
(-3) 		3
(-0.9) 		1.9
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15004
Sequence Type Exemplar sequence
Representative Public ID T20D4.2 NCBI
Target Description T20D4.2 /REP_DB=WormBase Gene ID /WP=CE13782 /TR=P91474 /GB=AAB37596.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071559 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-22) (srab-22) mRNA, complete cds. 11/11 None
SNAP00000008854 ENSEMBL cdna:SNAP chromosome:CEL140:V:3426662:3427559:1 11/11 None
GENEFINDER00000008862 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3426202:3427559:1 11/11 None
T20D4.2 ENSEMBL cdna:known chromosome:CEL140:V:3426202:3427559:1 gene:T20D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3426661-3427559(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-22
Ensembl T20D4.2
Entrez Gene 188638 Entrez gene
SwissProt P91474 EMBL-EBI
WormBase CE36509 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-176
blast AAB37597 Serpentine receptor, class ab (class a-like) protein 20 [Caenorhabditis elegans] ref|NP_503961.2| Serpentine Receptor, class AB (class A-like) family member (srab-20) [Caenorhabditis elegans] 1.0E-151
blast NP_503875 Serpentine Receptor, class AB (class A-like) family member (srab-8) [Caenorhabditis elegans] gb|AAB65926.1| Serpentine receptor, class ab (class a-like) protein 8 [Caenorhabditis elegans] 1.0E-148
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-119
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503960.2 7 24-46,53-75,110-129,142-164,184-206,247-269,274-296
T20D4.2 7 24-46,53-75,110-129,142-164,184-206,247-269,274-296
SNAP00000008854 4 48-70,90-112,153-175,180-202
GENEFINDER00000008862 7 24-46,53-75,110-129,142-164,184-206,247-269,274-296
Sequence
Target Sequence 
>C. ELEGANS:180850_AT
gatacatcgccacgattcgatcaccaagttatgagcactctggatgcacattgggtctac
tcatggccatattgcaacttacgatcggatttttctcgaccgcttttacattctccagtt
tttcatttgcggaccctttgatggattattgcattgcttttaaaattggaatatttggca
gcacggatgttattaatttgacgggcgtcgcaattcaaatttttggaagaatactgtttg
agctcatgtttcgaaagaatgaggaactccgatcaaaactactaacttcatcactgtcaa
atcgatactctttagagcaaaacgtgaaatctatggaaactttgaaagtgtttgctaatt
tacaatctattttccttactgcacagatgactatatttcttttcattctttatttagggc
tggcaattgaaaaaactacctacatttctttgattgaattgaatgctggctatccaatat
atgctgttgtttccattgtcattttattcagaagagatcgattgaacagggtgaagcttg
aaaagtctttggaagctcacatgtatgcggatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACATCGCCACGATTCGATCACC 449 423 110 Antisense
GCACATTGGGTCTACTCATGGCCAT 169 317 155 Antisense
GGCCATATTGCAACTTACGATCGGA 653 543 174 Antisense
ACGATCGGATTTTTCTCGACCGCTT 512 93 190 Antisense
TTTCATTTGCGGACCCTTTGATGGA 434 671 230 Antisense
GAATACTGTTTGAGCTCATGTTTCG 238 327 338 Antisense
GAGGAACTCCGATCAAAACTACTAA 193 375 370 Antisense
AAACTACTAACTTCATCACTGTCAA 19 129 385 Antisense
TTCATTCTTTATTTAGGGCTGGCAA 680 687 511 Antisense
TGCTGTTGTTTCCATTGTCATTTTA 41 583 591 Antisense
GAAGCTCACATGTATGCGGATCAAA 75 343 661 Antisense
Sequence Source Affymetrix Proprietary Database