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[180849_at]

Description C04C11.2 /REP_DB=WormBase Gene ID /WP=CE05210 /TR=Q17624 /GB=CAA96582.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      6grp_highest_nonorm > 50      6grp_total > 05      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 717
1 2 3 4 range
A 756.3
(3)
P 		595.2
(1.2)
P 		406.9
(-0.9)
P 		216.5
(-3)
A 		540
B 848
(3)
P 		438.1
(-0.6)
P 		473.6
(-0.3)
P 		160.4
(-3)
A 		688
C 865.1
(3)
P 		439.4
(-0.6)
P 		392
(-1)
P 		147.8
(-3)
A 		717
avr 823.1
(3) 		490.9
(-0.1) 		424.2
(-0.7) 		174.9
(-3) 		648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 870.1
(3)
P 		763.1
(1.6)
P 		399.2
(-3)
P 		522.5
(-1.4)
P 		407.5
(-2.9)
P 		434.2
(-2.6)
P 		471
B 786.2
(3)
P 		506.9
(-0.5)
P 		469.5
(-0.9)
P 		484.9
(-0.7)
P 		357.8
(-2.3)
P 		303.7
(-3)
P 		483
C 911.7
(3)
P 		593.2
(-0.6)
P 		636.4
(-0.1)
P 		515.2
(-1.4)
P 		406.8
(-2.6)
P 		374.7
(-3)
P 		537
avr 856
(3) 		621.1
(0.1) 		501.7
(-1.4) 		507.5
(-1.3) 		390.7
(-2.8) 		370.9
(-3) 		485
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 275.4
(3)
P 		129.2
(-0.6)
P 		106.4
(-1.2)
P 		31.7
(-3)
A 		244
B 270.4
(3)
P 		108.2
(-1.1)
P 		109.7
(-1.1)
P 		34.2
(-3)
A 		236
C 286.4
(3)
P 		126.3
(-0.7)
P 		136.6
(-0.4)
P 		24.9
(-3)
A 		262
avr 277.4
(3) 		121.2
(-0.8) 		117.6
(-0.9) 		30.3
(-3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 160.4
(-0.6)
P 		271.4
(3)
P 		86.9
(-3)
P 		132.5
(-1.5)
P 		123
(-1.8)
P 		105.7
(-2.4)
P 		185
B 273.5
(3)
P 		168.7
(-0.9)
P 		114
(-3)
P 		128.4
(-2.4)
P 		145.4
(-1.8)
P 		113.3
(-3)
P 		160
C 337.9
(3)
P 		181
(-1)
P 		162
(-1.5)
P 		103.6
(-3)
P 		131.6
(-2.3)
P 		125.4
(-2.4)
P 		234
avr 257.3
(3) 		207
(0.9) 		121
(-2.7) 		121.5
(-2.7) 		133.3
(-2.2) 		114.8
(-3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17861
Sequence Type Exemplar sequence
Representative Public ID C04C11.2 NCBI
Target Description C04C11.2 /REP_DB=WormBase Gene ID /WP=CE05210 /TR=Q17624 /GB=CAA96582.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077937 NCBI Caenorhabditis elegans C04C11.2 (C04C11.2) mRNA, complete cds. 11/11 None
SNAP00000006298 ENSEMBL cdna:SNAP chromosome:CEL140:X:14033727:14036899:1 11/11 None
GENEFINDER00000006309 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14033727:14036899:1 11/11 None
C04C11.2.2 ENSEMBL cdna:known chromosome:CEL140:X:14033714:14037335:1 gene:C04C11.2 11/11 None
C04C11.2.1 ENSEMBL cdna:known chromosome:CEL140:X:14033721:14037369:1 gene:C04C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14033726-14036899(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04C11.2
Entrez Gene 181514 Entrez gene
SwissProt Q17624 EMBL-EBI
WormBase CE05210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96582 Hypothetical protein C04C11.2 [Caenorhabditis elegans] ref|NP_510338.1| C04C11.2 [Caenorhabditis elegans] 0.0
blast CAE63046 Hypothetical protein CBG07317 [Caenorhabditis briggsae] 0.0
blast CAE63047 Hypothetical protein CBG07318 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 2.7E-17
Pfam IPR000698 EMBL-EBI Arrestin 3.1E-29
Sequence
Target Sequence 
>C. ELEGANS:180849_AT
cagtctatccataccctcaaaatgctggaactaatggaaaagctgccagtgtaacagtca
tcagcacagagcccagtcttcctcacagcatgtacgagccagagaaaactatcgtgacta
ccacgcgcacaatagtcacccattctgatggccacgagtcgaagacaatggaagaaacag
ttgtggagacggaaggcgaagttgtgaaaacagtgttggagagcacagtcaatgatgatg
gtatgaagacggagaaagttgagacgaccacaatagacgcatctggagatgagaaaacta
ctgtagagacatcaaagacccgtgtggcggagagcgctgaggttccagagattatcaagg
aagccagagaaagaattgaagagcttgttgagcatcaattgcatcactccccagagcact
ctccagccaccccaacagtcgagccaattgtagaaaccatcgtgaacgagaatggagaag
aaacgatcgtatccacagaagtcattgaacacggagatacgaaaacgatcaaaacgacga
cggtgactaagcacgcggatggatccgaatccacattggtccagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCTATCCATACCCTCAAAATGC 52 207 1139 Antisense
AACAGTCATCAGCACAGAGCCCAGT 549 135 1191 Antisense
GTCTTCCTCACAGCATGTACGAGCC 256 469 1214 Antisense
AAACTATCGTGACTACCACGCGCAC 25 129 1244 Antisense
AATAGTCACCCATTCTGATGGCCAC 444 173 1269 Antisense
GAGACGACCACAATAGACGCATCTG 681 393 1399 Antisense
AGACATCAAAGACCCGTGTGGCGGA 179 71 1445 Antisense
TGGCGGAGAGCGCTGAGGTTCCAGA 618 543 1463 Antisense
TTGAGCATCAATTGCATCACTCCCC 673 705 1526 Antisense
GACGACGGTGACTAAGCACGCGGAT 408 379 1674 Antisense
GGATCCGAATCCACATTGGTCCAGG 411 503 1699 Antisense
Sequence Source Affymetrix Proprietary Database