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[180848_at]

Description C09D4.6 /REP_DB=WormBase Gene ID /WP=CE08035 /TR=O01732 /GB=AAB53980.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 1.8
(-3)
A 		26
(3)
A 		5.8
(-2)
A 		24.6
(2.7)
A 		24
B 11.7
(-1.9)
A 		20.8
(-0.6)
A 		3.9
(-3)
A 		45.4
(3)
A 		42
C 3.5
(-3)
A 		5.6
(-2.6)
A 		3.2
(-3)
A 		43.3
(3)
A 		40
avr 5.7
(-2.7) 		17.5
(-0.6) 		4.3
(-3) 		37.8
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 7.1
(1.7)
A 		1.1
(-3)
A 		8.2
(2.5)
A 		6.5
(1.2)
A 		8.8
(3)
A 		2.4
(-2)
A 		8
B 21.6
(3)
A 		3
(-2.8)
A 		12
(-0)
A 		2.5
(-3)
A 		2.6
(-3)
A 		3.8
(-2.6)
A 		19
C 19.3
(-0.7)
A 		28.6
(0.5)
A 		3.1
(-2.7)
A 		48.7
(3)
A 		0.7
(-3)
A 		3.1
(-2.7)
A 		48
avr 16
(1.8) 		10.9
(-0.1) 		7.8
(-1.2) 		19.2
(3) 		4
(-2.7) 		3.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.6
(-3)
A 		5.6
(3)
A 		1.5
(-1.9)
A 		3.6
(0.6)
A 		5
B 3.7
(-1.1)
A 		5.1
(-0.1)
A 		0.9
(-3)
A 		9.7
(3)
A 		9
C 1.2
(-2.9)
A 		1.6
(-2.5)
A 		1.1
(-3)
A 		7.3
(3)
A 		6
avr 1.8
(-2.4) 		4.1
(0.1) 		1.2
(-3) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-0.5)
A 		0.4
(-3)
A 		1.8
(0.8)
A 		1.7
(0.5)
A 		2.6
(3)
A 		0.6
(-2.5)
A 		2
B 7.5
(3)
A 		1
(-2.7)
A 		2.9
(-1.1)
A 		0.7
(-3)
A 		1.1
(-2.6)
A 		1.4
(-2.4)
A 		7
C 7.1
(1.3)
A 		8.7
(2.3)
A 		0.8
(-2.6)
A 		9.8
(3)
A 		0.2
(-3)
A 		1
(-2.5)
A 		10
avr 5.3
(3) 		3.4
(0.3) 		1.8
(-1.9) 		4.1
(1.3) 		1.3
(-2.6) 		1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1140
Sequence Type Exemplar sequence
Representative Public ID C09D4.6 NCBI
Target Description C09D4.6 /REP_DB=WormBase Gene ID /WP=CE08035 /TR=O01732 /GB=AAB53980.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059208 NCBI Caenorhabditis elegans C09D4.6 (C09D4.6) mRNA, complete cds. 11/11 None
C09D4.6 ENSEMBL cdna:known chromosome:CEL140:I:5486461:5487153:-1 gene:C09D4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041674 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5486460-5487153(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09D4.6
Entrez Gene 182447 Entrez gene
SwissProt O01732 EMBL-EBI
WormBase CE08035 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53980 Hypothetical protein C09D4.6 [Caenorhabditis elegans] ref|NP_491609.1| C09D4.6 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491609.1 4 24-46,67-89,99-121,157-179
C09D4.6 4 24-46,67-89,99-121,157-179
Sequence
Target Sequence 
>C. ELEGANS:180848_AT
gatggagtcgtatactttcagtttaattctcacaatttttatgtttttacatattgaacg
aatcgcgagatcaacgtttggaaatgtaatttgtccaagaagttttgctctgcaaatggt
tctaacacatttctcaatgataattgtcattattgtaattgttggaattgtatggatcgc
ccctagcactatcacccaaatcgtatcgtttctactttttgcatttttcgggtatctttt
aaacattggtccaggaacattcccaactttctcggtggcggacccattttactggaatca
gaatagagcaatttctccttcgtacgatagagccttcaaaacagttatgctatgtggtat
ctctttcagtttcgcgcaccttgattttttctggtattcaatagcatcaagttgtttaat
aatgtttgatgtcattttaatggcacactattgggaaattttcggtccagatgatccggg
agaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGAGTCGTATACTTTCAGTTTA 120 407 96 Antisense
TTGTCCAAGAAGTTTTGCTCTGCAA 340 709 186 Antisense
TTTGCTCTGCAAATGGTTCTAACAC 465 667 199 Antisense
GTTGGAATTGTATGGATCGCCCCTA 554 435 256 Antisense
ATCGTATCGTTTCTACTTTTTGCAT 622 33 295 Antisense
GTCCAGGAACATTCCCAACTTTCTC 682 475 344 Antisense
GTGGCGGACCCATTTTACTGGAATC 78 493 370 Antisense
GAATAGAGCAATTTCTCCTTCGTAC 167 327 396 Antisense
TCCTTCGTACGATAGAGCCTTCAAA 540 589 411 Antisense
TATGTGGTATCTCTTTCAGTTTCGC 181 655 446 Antisense
TTTCGGTCCAGATGATCCGGGAGAA 134 667 555 Antisense
Sequence Source Affymetrix Proprietary Database