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[180847_at] 7TM chemoreceptor, sri family

Description C41G6.10 /REP_DB=WormBase Gene ID /WP=CE23586 /TR=O17658 /GB=CAB02830.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 10      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 2.8
(-3)
A 		8.7
(0.5)
A 		2.9
(-2.9)
A 		12.9
(3)
A 		10
B 3.3
(-3)
A 		3.7
(-2.9)
A 		3.5
(-3)
A 		40.8
(3)
A 		38
C 3.3
(-2.7)
A 		6.2
(-2.1)
A 		1.7
(-3)
A 		32.8
(3)
A 		31
avr 3.1
(-2.9) 		6.2
(-2.2) 		2.7
(-3) 		28.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.2
(-1.8)
A 		1.6
(-3)
A 		2.9
(-2.7)
A 		2.1
(-2.9)
A 		30.1
(3)
A 		28.8
(2.7)
A 		29
B 1.7
(-3)
A 		4
(2.1)
A 		4
(2.1)
A 		1.8
(-2.8)
A 		4.4
(3)
A 		2.2
(-1.9)
A 		3
C 2.2
(-3)
A 		7.6
(3)
A 		2.4
(-2.8)
A 		7.1
(2.4)
A 		5.1
(0.2)
A 		3.9
(-1.1)
A 		5
avr 3.7
(-2.6) 		4.4
(-2.2) 		3.1
(-3) 		3.7
(-2.6) 		13.2
(3) 		11.6
(2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1
(-1.9)
A 		1.9
(3)
A 		0.8
(-3)
A 		1.9
(3)
A 		1
B 1
(-2.8)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		8.7
(3)
A 		8
C 1.1
(-2.4)
A 		1.8
(-1.5)
A 		0.6
(-3)
A 		5.5
(3)
A 		5
avr 1
(-2.6) 		1.5
(-2) 		0.7
(-3) 		5.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.3
(-2.4)
A 		0.6
(-2.9)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		9.1
(3)
A 		7
(1.5)
A 		9
B 0.6
(-2.5)
A 		1.3
(0.7)
A 		1
(-0.7)
A 		0.5
(-3)
A 		1.8
(3)
A 		0.8
(-1.6)
A 		1
C 0.8
(-2.3)
A 		2.3
(3)
A 		0.6
(-3)
A 		1.4
(-0.2)
A 		1.6
(0.5)
A 		1.3
(-0.5)
A 		2
avr 0.9
(-2.7) 		1.4
(-1.8) 		0.7
(-3) 		0.8
(-2.8) 		4.2
(3) 		3
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12878
Sequence Type Exemplar sequence
Representative Public ID C41G6.10 NCBI
Target Description C41G6.10 /REP_DB=WormBase Gene ID /WP=CE23586 /TR=O17658 /GB=CAB02830.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074359 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-25) (sri-25) mRNA, complete cds. 11/11 None
GENEFINDER00000010446 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15219144:15221906:1 11/11 None
C41G6.10 ENSEMBL cdna:known chromosome:CEL140:V:15220158:15221906:1 gene:C41G6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010436 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15220157-15221906(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-25
Ensembl C41G6.10
Entrez Gene 183386 Entrez gene
SwissProt O17658 EMBL-EBI
WormBase CE23586 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02830 Hypothetical protein C41G6.10 [Caenorhabditis elegans] ref|NP_506760.1| Serpentine Receptor, class I family member (sri-25) [Caenorhabditis elegans] 0.0
blast CAB60283 Hypothetical protein C41G6.14 [Caenorhabditis elegans] ref|NP_506759.1| Serpentine Receptor, class I family member (sri-26) [Caenorhabditis elegans] 1.0E-108
blast CAB02835 Hypothetical protein C41G6.11 [Caenorhabditis elegans] ref|NP_506758.1| Serpentine Receptor, class I family member (sri-24) [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.8E-86
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-8
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.8E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506760.1 7 15-37,44-66,94-116,129-151,191-213,244-266,276-298
C41G6.10 7 15-37,44-66,94-116,129-151,191-213,244-266,276-298
GENEFINDER00000010446 9 10-27,34-56,105-127,139-161,181-203,224-246,282-304,335-357,367-389
Sequence
Target Sequence 
>C. ELEGANS:180847_AT
gaggagtacttcttcagttccaaattggatttatcatgtcctgttaggcatgatcgtctt
cctgatatggtcattaacattcactttgagcatgagcagtgagagctatgaaaagcaatt
ggaaatgcttgacatttttcaccccctcgtctctacaaagttcagaaacctacccgagtt
tcaatactactacctgaacacttggatgttgatttttttcaccctcacaatttttgaaac
tatgaaatcatttttgatggtgtctggaactgtgactcaaatgtatcgagcactgaaaga
agttgaatgtcagctgtcaagtcaaacacttgctaagcataaatctgcattgagaagctt
gattgctcagtttgcaacaactcccgtcgcaatactacctggcggaatgatcgcgtgtac
tgtaatatttccaacggaatactcccaaaaaatatcctggtgttgcatgatggttatgac
cacccactcaactctcaactcactggtcgttattttgacatacccggaattccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAGTACTTCTTCAGTTCCAAAT 331 403 384 Antisense
GTCCTGTTAGGCATGATCGTCTTCC 176 477 421 Antisense
GAAATGCTTGACATTTTTCACCCCC 519 351 505 Antisense
CCCCTCGTCTCTACAAAGTTCAGAA 586 261 526 Antisense
TACCCGAGTTTCAATACTACTACCT 8 649 554 Antisense
GGATGTTGATTTTTTTCACCCTCAC 57 515 587 Antisense
TCCCGTCGCAATACTACCTGGCGGA 493 597 765 Antisense
ACCTGGCGGAATGATCGCGTGTACT 391 87 780 Antisense
TGATGGTTATGACCACCCACTCAAC 505 567 851 Antisense
AACTCTCAACTCACTGGTCGTTATT 386 141 873 Antisense
TATTTTGACATACCCGGAATTCCGA 163 661 894 Antisense
Sequence Source Affymetrix Proprietary Database