[Home] | [Total List]

[180846_at]

Description C27D9.2 /REP_DB=WormBase Gene ID /WP=CE06892 /TR=Q18256 /GB=AAA93431.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      6grp_highest_nonorm > 91      6grp_total > 83      4grp_total > 41      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 6.9
(-3)
A 		145
(3)
P 		118.7
(1.9)
A 		73.3
(-0.1)
A 		138
B 52.7
(-3)
A 		146.4
(2.8)
P 		150.4
(3)
P 		60.8
(-2.5)
A 		98
C 49.3
(-3)
A 		97
(3)
P 		96.6
(2.9)
P 		76.4
(0.4)
A 		48
avr 36.3
(-3) 		129.5
(3) 		121.9
(2.5) 		70.2
(-0.8) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 125.5
(-3)
P 		129
(-2.9)
P 		195
(-1.9)
P 		495.1
(3)
P 		454.1
(2.3)
P 		166.4
(-2.3)
P 		370
B 114.9
(-3)
P 		165.9
(-2.2)
P 		119.1
(-2.9)
P 		406.2
(1.8)
P 		480.2
(3)
P 		193.4
(-1.7)
P 		365
C 82.1
(-3)
P 		125.6
(-2.3)
P 		165.6
(-1.6)
P 		440.1
(3)
P 		439.4
(3)
P 		200.4
(-1)
P 		358
avr 107.5
(-3) 		140.2
(-2.4) 		159.9
(-2.1) 		447.1
(2.8) 		457.9
(3) 		186.7
(-1.6) 		350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 2.5
(-3)
A 		31.5
(3)
P 		31
(2.9)
A 		10.7
(-1.3)
A 		29
B 16.8
(-2)
A 		36.2
(3)
P 		34.9
(2.7)
P 		13
(-3)
A 		23
C 16.3
(-2)
A 		27.9
(1.3)
P 		33.7
(3)
P 		12.9
(-3)
A 		21
avr 11.9
(-3) 		31.9
(2.6) 		33.2
(3) 		12.2
(-2.9) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 23.1
(-3)
P 		45.9
(-1.8)
P 		42.5
(-2)
P 		125.6
(2.4)
P 		137
(3)
P 		40.5
(-2.1)
P 		114
B 40
(-2.6)
P 		55.2
(-2.1)
P 		28.9
(-3)
P 		107.6
(-0.2)
P 		195.1
(3)
P 		72.1
(-1.4)
P 		166
C 30.4
(-3)
P 		38.3
(-2.6)
P 		42.2
(-2.4)
P 		88.5
(0.1)
P 		142.2
(3)
P 		67.1
(-1)
P 		112
avr 31.2
(-3) 		46.5
(-2.3) 		37.9
(-2.7) 		107.2
(0.6) 		158.1
(3) 		59.9
(-1.6) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5533
Sequence Type Exemplar sequence
Representative Public ID C27D9.2 NCBI
Target Description C27D9.2 /REP_DB=WormBase Gene ID /WP=CE06892 /TR=Q18256 /GB=AAA93431.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062451
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000035797 ENSEMBL cdna:SNAP chromosome:CEL140:II:4755668:4756752:-1 11/11 None
GENEFINDER00000035798 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4755668:4756752:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062451 5/11 Cross Hyb Matching Probes None
C27D9.2 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4756180-4756751(-) 91.24 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE73214 Hypothetical protein CBG20620 [Caenorhabditis briggsae] 1.0E-58
blast AAK31500 Hypothetical protein F26G1.3 [Caenorhabditis elegans] ref|NP_494853.1| F26G1.3 [Caenorhabditis elegans] 1.0E-22
blast AAA93431 Hypothetical protein C27D9.2 [Caenorhabditis elegans] ref|NP_494852.2| C27D9.2 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:180846_AT
tattattggttgttcctttgctggaagttgctgctggatcttcaaagtttaaaactttca
aaattcgaggaatgttaacgtgccgtggggatccaataaaagggaatattataatggttg
atgataattggtccttcacggatcatcttctcagtgaacgaaaagtcactgaagacggta
aattcagtttggcgggggagccggacgatgattgtctcaacgtgaagctcattgttcagc
acagatgccatgatatgaaaactggaagaagtgattcaagaattaaaggattttctgaat
tttcaattcatttggaggatcttatcagaagcaattatgatctagaaatgaatattgagt
tggtgggaaacagtgttcgtatgtcatctcctgttattccggcttataaggcttggcttt
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATTGGTTGTTCCTTTGCTGGA 116 663 29 Antisense
CTTTGCTGGAAGTTGCTGCTGGATC 415 223 44 Antisense
GTTAACGTGCCGTGGGGATCCAATA 632 311 102 Antisense
AATTGGTCCTTCACGGATCATCTTC 200 179 154 Antisense
CGGATCATCTTCTCAGTGAACGAAA 307 241 167 Antisense
TTCAGTTTGGCGGGGGAGCCGGACG 617 651 211 Antisense
GGAGCCGGACGATGATTGTCTCAAC 603 521 225 Antisense
GAAGCTCATTGTTCAGCACAGATGC 698 341 252 Antisense
CAGTGTTCGTATGTCATCTCCTGTT 387 207 399 Antisense
TCTCCTGTTATTCCGGCTTATAAGG 135 609 415 Antisense
TTCCGGCTTATAAGGCTTGGCTTTA 299 697 425 Antisense
Sequence Source Affymetrix Proprietary Database