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[180845_s_at]

Description R07G3.8 /REP_DB=WormBase Gene ID /WP=CE02027 /TR=Q09387 /GB=AAK31548.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 21      6grp_total > 24      4grp_total > 19      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 826
1 2 3 4 range
A 1081.4
(-2.9)
P 		1389.9
(-0.3)
P 		1070.9
(-3)
P 		1786.6
(3)
P 		716
B 1273.6
(-0.8)
P 		1415.1
(0.2)
P 		983.4
(-3)
P 		1791.3
(3)
P 		808
C 1124.2
(-2.4)
P 		1462.4
(0.2)
P 		1052
(-3)
P 		1809.8
(3)
P 		758
avr 1159.7
(-2) 		1422.5
(0.1) 		1035.4
(-3) 		1795.9
(3) 		761

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1056
1 2 3 4 5 6 range
A 1816.3
(3)
P 		1197.4
(-1.8)
P 		1381.8
(-0.4)
P 		1047.4
(-2.9)
P 		1052
(-2.9)
P 		1039.3
(-3)
P 		777
B 1373
(1)
P 		1644.9
(3)
P 		1518.4
(2.1)
P 		1347.5
(0.8)
P 		826.2
(-3)
P 		1130.3
(-0.8)
P 		819
C 1395.1
(2.2)
P 		1496.6
(3)
P 		1116.9
(-0.1)
P 		1170.9
(0.3)
P 		760.1
(-3)
P 		1137.9
(0.1)
P 		737
avr 1528.1
(3) 		1446.3
(2.2) 		1339
(1.3) 		1188.6
(-0.1) 		879.4
(-3) 		1102.5
(-0.9) 		649
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 393.7
(3)
P 		301.7
(-1.2)
P 		280
(-2.2)
P 		261.5
(-3)
P 		132
B 406.2
(3)
P 		349.5
(1.1)
P 		227.9
(-3)
P 		381.7
(2.2)
P 		178
C 372.2
(0.5)
P 		420.5
(3)
P 		366.6
(0.2)
P 		305.2
(-3)
P 		115
avr 390.7
(3) 		357.2
(1) 		291.5
(-3) 		316.1
(-1.5) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 334.8
(-0.2)
P 		425.8
(3)
P 		300.9
(-1.3)
P 		265.7
(-2.6)
P 		317.4
(-0.8)
P 		253
(-3)
P 		173
B 477.7
(1)
P 		547.5
(3)
P 		368.7
(-2.1)
P 		356.9
(-2.4)
P 		335.7
(-3)
P 		421.5
(-0.6)
P 		212
C 517.1
(3)
P 		456.7
(1.7)
P 		284.3
(-2)
P 		235.5
(-3)
P 		246
(-2.8)
P 		380.9
(0.1)
P 		282
avr 443.2
(1.9) 		476.7
(3) 		318
(-2) 		286
(-3) 		299.7
(-2.6) 		351.8
(-0.9) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180845_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5519
Sequence Type Exemplar sequence
Representative Public ID R07G3.8 NCBI
Target Description R07G3.8 /REP_DB=WormBase Gene ID /WP=CE02027 /TR=Q09387 /GB=AAK31548.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063198 NCBI Caenorhabditis elegans R07G3.8 (R07G3.8) mRNA, complete cds. 11/11 None
SNAP00000041810 ENSEMBL cdna:SNAP chromosome:CEL140:II:7618437:7620447:-1 11/11 None
GENEFINDER00000041820 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7618437:7620435:-1 11/11 None
R07G3.8 ENSEMBL cdna:known chromosome:CEL140:II:7618221:7620436:-1 gene:R07G3.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7618433-7620432(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07G3.8
Entrez Gene 174234 Entrez gene
SwissProt Q09387 EMBL-EBI
WormBase CE02027 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600233_AT similar to CG32066-PB, isoform B cfa
CANINE:1591874_AT similar to CG32066-PB, isoform B cfa
CANINE_2:CFA.9526.1.A1_S_AT similar to CG32066-PB, isoform B cfa
CANINE_2:CFA.9526.2.A1_AT similar to CG32066-PB, isoform B cfa
CHICKEN:GGAAFFX.13083.1.S1_S_AT similar to hypothetical protein DKFZp566A1524 gga
HG-U133_PLUS_2:208092_S_AT family with sequence similarity 49, member A hs
HG-U133A:208092_S_AT family with sequence similarity 49, member A hs
HG-U133A_2:208092_S_AT family with sequence similarity 49, member A hs
HU35KSUBA:RC_AA350817_AT family with sequence similarity 49, member A hs
U133_X3P:G13540579_3P_S_AT family with sequence similarity 49, member A hs
HG-U95AV2:35143_AT family with sequence similarity 49, member A hs
HG-U133_PLUS_2:209683_AT Family with sequence similarity 49, member A hs
HG-U133A_2:209683_AT Family with sequence similarity 49, member A hs
HG-U133A:209683_AT Family with sequence similarity 49, member A hs
HG-U133_PLUS_2:230276_AT Family with sequence similarity 49, member A hs
HG-U133B:230276_AT Family with sequence similarity 49, member A hs
HU35KSUBA:RC_AA243139_AT Family with sequence similarity 49, member A hs
HU35KSUBC:RC_D51291_AT Family with sequence similarity 49, member A hs
U133_X3P:HS.4863.0.S2_3P_AT Family with sequence similarity 49, member A hs
U133_X3P:HS.125780.0.A1_3P_X_AT Family with sequence similarity 49, member A hs
U133_X3P:HS.125780.0.A1_3P_S_AT Family with sequence similarity 49, member A hs
U133_X3P:HS.125780.0.A1_3P_AT Family with sequence similarity 49, member A hs
HG-U95B:52183_AT Family with sequence similarity 49, member A hs
HG-U95C:64419_AT Family with sequence similarity 49, member A hs
HG-U95E:73933_AT Family with sequence similarity 49, member A hs
MOUSE430_2:1432124_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOE430B:1432124_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MG-U74BV2:111518_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MG-U74CV2:168655_R_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOE430B:1431045_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOUSE430_2:1431045_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOE430B:1454806_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MOUSE430_2:1454806_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
MU19KSUBC:TC40488_AT DNA segment, Chr 12, ERATO Doi 553, expressed mm
RAE230B:1394470_AT similar to hypothetical protein DKFZp566A1524 (predicted) rn
RAT230_2:1394470_AT similar to hypothetical protein DKFZp566A1524 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK31548 Hypothetical protein R07G3.8 [Caenorhabditis elegans] ref|NP_495599.1| R07G3.8 [Caenorhabditis elegans] 0.0
blast CAE67504 Hypothetical protein CBG13014 [Caenorhabditis briggsae] 1.0E-180
blast NP_001016838 hypothetical protein LOC549592 [Xenopus tropicalis] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR009828 EMBL-EBI Protein of unknown function DUF1394 1.0E-126
Pfam IPR009828 EMBL-EBI Protein of unknown function DUF1394 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180845_S_AT
gcccattacctctcgaagaacaacttgcaaataaacaatcaattgccaaacagtttgcac
gattaattggatttgtattggactttgatgtcgtaaaaatgagaaccgcccagataacaa
atgattacagttattaccgacgagcaaaacatattgtttatcaggattttgaagaccaag
gagttcccgaattaccacaagttcaaatgtttctttgtgaaggaaatccaatgttaaaag
cactttgtaatggtgtagattcgtacatgcagacacatcaaagcttgccaattaacaata
caactgatgtttttgtaacaattatcaacgtttgccgattcatgttagcaaatgacgaat
gtctggcacgactgacagattcatcgaaacatctttgctgtcgagtgatgactggccttg
taatattattcgatcacgtagatcaaaatggtgcattcgtgtcaaactcatcaattgata
tgagagatgttgtcaggttgatcaaactaaataccactcctgaacagtctgattgtctac
ttgctggtcttcgtttcacaacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCATTACCTCTCGAAGAACAACT 424 277 395 Antisense
GAGAACCGCCCAGATAACAAATGAT 607 391 495 Antisense
GATTACAGTTATTACCGACGAGCAA 240 429 517 Antisense
GAGTTCCCGAATTACCACAAGTTCA 469 397 575 Antisense
GTAGATTCGTACATGCAGACACATC 94 457 649 Antisense
ATGACGAATGTCTGGCACGACTGAC 134 45 746 Antisense
GCTGTCGAGTGATGACTGGCCTTGT 499 295 791 Antisense
GGTGCATTCGTGTCAAACTCATCAA 224 501 844 Antisense
AATACCACTCCTGAACAGTCTGATT 239 173 904 Antisense
AGTCTGATTGTCTACTTGCTGGTCT 401 61 920 Antisense
TTGCTGGTCTTCGTTTCACAACAAA 551 701 935 Antisense
Sequence Source Affymetrix Proprietary Database