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[180844_at]

Description Y43F8A.3 /REP_DB=WormBase Gene ID /WP=CE21882 /TR=Q9XWL5 /GB=CAA21641.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 96.9
(-3)
A 		115.2
(-2.8)
A 		148
(-2.3)
A 		550.3
(3)
P 		453
B 77.3
(-3)
A 		116.6
(-2.4)
A 		145.2
(-2)
A 		474
(3)
P 		397
C 103.2
(-3)
A 		111.2
(-2.9)
A 		112.9
(-2.8)
A 		460.4
(3)
P 		357
avr 92.5
(-3) 		114.3
(-2.7) 		135.4
(-2.4) 		494.9
(3) 		402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 104
(-3)
A 		184
(-2.2)
P 		176.2
(-2.3)
P 		224.6
(-1.8)
P 		264.5
(-1.4)
P 		704.5
(3)
P 		601
B 88.5
(-3)
A 		160.3
(-2.2)
P 		146.1
(-2.4)
P 		216.4
(-1.7)
P 		308.8
(-0.7)
P 		661.1
(3)
P 		573
C 118.5
(-3)
A 		125.9
(-2.9)
P 		141.5
(-2.8)
P 		205.3
(-2.2)
P 		250.4
(-1.8)
P 		754
(3)
P 		636
avr 103.7
(-3) 		156.7
(-2.5) 		154.6
(-2.5) 		215.4
(-1.9) 		274.6
(-1.3) 		706.5
(3) 		603
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 35.3
(-1.9)
A 		25
(-3)
A 		38.7
(-1.5)
A 		80.6
(3)
P 		56
B 24.6
(-3)
A 		28.8
(-2.7)
A 		33.7
(-2.3)
A 		101
(3)
P 		76
C 34.1
(-2.7)
A 		32
(-3)
A 		39.4
(-2)
A 		77.6
(3)
P 		46
avr 31.3
(-2.7) 		28.6
(-3) 		37.3
(-2.1) 		86.4
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 19.2
(-3)
A 		65.4
(-1.2)
P 		38.4
(-2.2)
P 		57
(-1.5)
P 		79.8
(-0.6)
P 		171.5
(3)
P 		152
B 30.8
(-3)
A 		53.3
(-2.4)
P 		35.5
(-2.9)
P 		57.3
(-2.3)
P 		125.5
(-0.4)
P 		246.5
(3)
P 		216
C 43.9
(-2.8)
A 		38.4
(-2.9)
P 		36
(-3)
P 		41.3
(-2.9)
P 		81
(-1.8)
P 		252.4
(3)
P 		216
avr 31.3
(-3) 		52.4
(-2.3) 		36.6
(-2.8) 		51.9
(-2.4) 		95.4
(-1) 		223.5
(3) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12832
Sequence Type Exemplar sequence
Representative Public ID Y43F8A.3 NCBI
Target Description Y43F8A.3 /REP_DB=WormBase Gene ID /WP=CE21882 /TR=Q9XWL5 /GB=CAA21641.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075370 NCBI Caenorhabditis elegans Y43F8A.3 (Y43F8A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000034971 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19380023:19383553:1 11/11 None
Y43F8A.3 ENSEMBL cdna:known chromosome:CEL140:V:19380023:19383607:1 gene:Y43F8A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034968 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19380022-19383553(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8A.3
Entrez Gene 189866 Entrez gene
SwissProt Q9XWL5 EMBL-EBI
WormBase CE38569 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604198_AT similar to arylacetamide deacetylase-like 1 cfa
CANINE_2:CFA.20917.1.S1_S_AT similar to arylacetamide deacetylase-like 1 cfa
CANINE_2:CFA.360.2.S1_AT similar to arylacetamide deacetylase-like 1 cfa
CANINE_2:CFAAFFX.23654.1.S1_S_AT similar to arylacetamide deacetylase-like 1 cfa
CHICKEN:GGAAFFX.5797.1.S1_AT similar to KIAA1363 protein gga
HU35KSUBB:RC_Z41342_AT arylacetamide deacetylase-like 1 hs
U133_X3P:HS.22941.0.S1_3P_X_AT arylacetamide deacetylase-like 1 hs
U133_X3P:HS.22941.0.S1_3P_AT arylacetamide deacetylase-like 1 hs
HG-U133_PLUS_2:225847_AT arylacetamide deacetylase-like 1 hs
HG-U133B:225847_AT arylacetamide deacetylase-like 1 hs
HG-U95B:43038_R_AT arylacetamide deacetylase-like 1 hs
HG-U95E:76435_AT arylacetamide deacetylase-like 1 hs
HG-U95E:77022_AT arylacetamide deacetylase-like 1 hs
HG-U133_PLUS_2:244086_AT Arylacetamide deacetylase-like 1 hs
HG-U133B:244086_AT Arylacetamide deacetylase-like 1 hs
HG-U95E:69101_AT Arylacetamide deacetylase-like 1 hs
U133_X3P:HS.269762.0.A1_3P_AT Arylacetamide deacetylase-like 1 hs
MG-U74BV2:114734_AT arylacetamide deacetylase-like 1 mm
MG-U74BV2:106604_AT arylacetamide deacetylase-like 1 mm
MG-U74BV2:106605_AT arylacetamide deacetylase-like 1 mm
MG-U74BV2:164295_I_AT arylacetamide deacetylase-like 1 mm
MOE430B:1455227_AT arylacetamide deacetylase-like 1 mm
MOUSE430_2:1455227_AT arylacetamide deacetylase-like 1 mm
MOE430B:1435134_AT arylacetamide deacetylase-like 1 mm
MOUSE430_2:1435134_AT arylacetamide deacetylase-like 1 mm
MOE430B:1435135_AT arylacetamide deacetylase-like 1 mm
MOUSE430_2:1435135_AT arylacetamide deacetylase-like 1 mm
MU19KSUBA:TC21774_AT Arylacetamide deacetylase-like 1, mRNA (cDNA clone MGC:105251 IMAGE:30550100) mm
MU19KSUBC:TC37386_AT Arylacetamide deacetylase-like 1, mRNA (cDNA clone MGC:105251 IMAGE:30550100) mm
RAE230A:1374265_AT Similar to arylacetamide deacetylase (esterase) (predicted) rn
RAT230_2:1374265_AT Similar to arylacetamide deacetylase (esterase) (predicted) rn
RG-U34C:RC_AI071628_AT Similar to arylacetamide deacetylase (esterase) (predicted) rn
RG-U34C:RC_AI228301_AT Similar to arylacetamide deacetylase (esterase) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA21641 Hypothetical protein Y43F8A.3 [Caenorhabditis elegans] ref|NP_507771.2| Y43F8A.3 [Caenorhabditis elegans] 0.0
blast CAE61687 Hypothetical protein CBG05633 [Caenorhabditis briggsae] 1.0E-179
blast CAE61687 Hypothetical protein CBG05633 [Caenorhabditis briggsae] 1.0E-177
blast CAE72784 Hypothetical protein CBG20044 [Caenorhabditis briggsae] 1.0E-114
blast CAE72784 Hypothetical protein CBG20044 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507771.2 3 5-27,122-144,252-274
Y43F8A.3 3 5-27,125-147,257-279
GENEFINDER00000034971 3 5-27,125-147,257-279
Sequence
Target Sequence 
>C. ELEGANS:180844_AT
caaagcttttggctcaggtgctgctgtaccccctgttgcagctggtagatttgcaaatga
cgtcataccggtattttcataaaaggctgactggaattgcgtttgtagaccccgcctcag
ttgcattttactacatgctgtatgctggtattcccctggaaaaagctaaggaactagtgc
ctatagtgctgacaaatgggcatgtgaagccggattacagagagaaaatcgataagcttc
tcacctaccgtaccaccatcgaatccacccacacctacaacacaacgaaaatcccaaaaa
gatgggaaatcgtagaaaactcggaagcccaaaatttgctagaaaaagttattttcgacc
cgaatttctcgccgataatgcgggaaaatctagaaaatttgccgaaaagtttgattgtca
cctgtgaatacgatgtgctcagggacgagggcttgatctactccgagaggcttatggctt
ctggagtgcctacaaagcttataaactacaaaaatgggtaccatgcaatgctcaatatgc
acaatgagattaccgaggcttccacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGCTTTTGGCTCAGGTGCTGCT 56 193 695 Antisense
TACCCCCTGTTGCAGCTGGTAGATT 682 647 721 Antisense
AAGGCTGACTGGAATTGCGTTTGTA 430 161 777 Antisense
CCGCCTCAGTTGCATTTTACTACAT 156 263 806 Antisense
ACATGCTGTATGCTGGTATTCCCCT 482 105 827 Antisense
CCCACACCTACAACACAACGAAAAT 136 259 962 Antisense
GACCCGAATTTCTCGCCGATAATGC 124 383 1051 Antisense
CAGGGACGAGGGCTTGATCTACTCC 682 205 1134 Antisense
GATCTACTCCGAGAGGCTTATGGCT 237 419 1149 Antisense
GGCTTATGGCTTCTGGAGTGCCTAC 32 537 1163 Antisense
AATGAGATTACCGAGGCTTCCACGT 501 165 1237 Antisense
Sequence Source Affymetrix Proprietary Database