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[180843_at]

Description W03G1.2 /REP_DB=WormBase Gene ID /WP=CE17280 /TR=Q9UAY5 /GB=AAD14750.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.1
(-1.1)
A 		3.2
(-3)
A 		5.5
(-2.1)
A 		18.4
(3)
A 		15
B 5.7
(3)
A 		2
(-3)
A 		4.3
(0.7)
A 		3.5
(-0.6)
A 		4
C 1.7
(-2.9)
A 		1.4
(-3)
A 		5.5
(-1.3)
A 		16.2
(3)
A 		15
avr 5.2
(-1.3) 		2.2
(-3) 		5.1
(-1.3) 		12.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 4.2
(-3)
A 		5.2
(-2.9)
A 		13.2
(-2.1)
A 		5.2
(-2.9)
A 		4.9
(-2.9)
A 		61.8
(3)
A 		58
B 2.5
(-3)
A 		11.8
(-1.1)
A 		5.5
(-2.4)
A 		4.4
(-2.6)
A 		31.4
(3)
A 		12.9
(-0.8)
A 		29
C 3.5
(-3)
A 		4.4
(-2.7)
A 		4.3
(-2.8)
A 		4.3
(-2.8)
A 		11
(-0.9)
A 		25
(3)
A 		22
avr 3.4
(-3) 		7.1
(-2.3) 		7.7
(-2.1) 		4.6
(-2.8) 		15.8
(-0.5) 		33.2
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3
(3)
A 		0.7
(-3)
A 		1.4
(-1.2)
A 		2.7
(2.2)
A 		2
B 1.8
(3)
A 		0.5
(-3)
A 		1
(-0.7)
A 		0.7
(-2.1)
A 		1
C 0.6
(-2.5)
A 		0.4
(-3)
A 		1.9
(0.9)
A 		2.7
(3)
A 		2
avr 1.8
(2.2) 		0.5
(-3) 		1.4
(0.6) 		2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.9
(-2.5)
A 		2.9
(-2.1)
A 		1.3
(-2.8)
A 		1.5
(-2.7)
A 		15
(3)
A 		14
B 0.9
(-3)
A 		3.9
(-1.5)
A 		1.3
(-2.8)
A 		1.2
(-2.8)
A 		12.7
(3)
A 		4.8
(-1)
A 		12
C 1.3
(-2.7)
A 		1.3
(-2.7)
A 		1.1
(-2.8)
A 		0.9
(-3)
A 		3.6
(-0.8)
A 		8.4
(3)
A 		8
avr 1
(-3) 		2.4
(-2) 		1.8
(-2.4) 		1.1
(-2.9) 		5.9
(0.5) 		9.4
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180843_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10668
Sequence Type Exemplar sequence
Representative Public ID W03G1.2 NCBI
Target Description W03G1.2 /REP_DB=WormBase Gene ID /WP=CE17280 /TR=Q9UAY5 /GB=AAD14750.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067540 NCBI Caenorhabditis elegans W03G1.2 (W03G1.2) mRNA, complete cds. 11/11 A 
SNAP00000041682 ENSEMBL cdna:SNAP chromosome:CEL140:IV:524951:526388:1 11/11 None
GENEFINDER00000041696 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:524697:526388:1 11/11 None
W03G1.2 ENSEMBL cdna:known chromosome:CEL140:IV:524697:526388:1 gene:W03G1.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019801 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:524696-526388(+) 100.0 100.0
chrIV:5467385-5469036(+) 93.07 93.07
Public Domain and Genome References
Gene Title
Ensembl W03G1.2
Entrez Gene 189165 Entrez gene
SwissProt Q9UAY5 EMBL-EBI
WormBase CE17280 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14750 Hypothetical protein W03G1.2 [Caenorhabditis elegans] ref|NP_499941.1| W03G1.2 [Caenorhabditis elegans] 1.0E-146
blast AAD14750 Hypothetical protein W03G1.2 [Caenorhabditis elegans] ref|NP_499941.1| W03G1.2 [Caenorhabditis elegans] 1.0E-141
blast AAF60751 Hypothetical protein Y52D5A.1 [Caenorhabditis elegans] ref|NP_500814.1| Y52D5A.1 [Caenorhabditis elegans] 3.0E-91
blast AAF60751 Hypothetical protein Y52D5A.1 [Caenorhabditis elegans] ref|NP_500814.1| Y52D5A.1 [Caenorhabditis elegans] 2.0E-86
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 3.0E-44
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 4.0E-44
Sequence
Target Sequence 
>C. ELEGANS:180843_AT
ttctaccgtaccaacacttcaaagaagaaactgaagacgtctttacttcccgttgaggat
tcttatgatcacgttcgaaaattggaggacattaagaaggaaccagagcaagatgtgtac
aagggtcaggacgtccccacctgggcagtaaaaatagaaccaactgacgatgacatgaaa
gagaccgacgaggcgatcactgtgagtaccgatcatttggagatgtaccgaaacaagaag
ctcagtctcaaaagcattccccccacgaaactggtgctcaacgagctacaaccgttggtg
gagttgaagaagagagatgaagttcactttgagaccgggctggtgttctccaacacgatt
cggagtctgttgcttgtccatgagagtgctcgagcgctgagtgatggaaaagtggatgat
gagtattccgacaagaaggtccagtttgatacacaggaaccggaagcaacatacatctac
tcgagaatcaacccaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTACCGTACCAACACTTCAAAGA 84 689 535 Antisense
GAGGCGATCACTGTGAGTACCGATC 136 407 724 Antisense
CCACGAAACTGGTGCTCAACGAGCT 396 271 797 Antisense
TGAAGTTCACTTTGAGACCGGGCTG 375 573 852 Antisense
TTTGAGACCGGGCTGGTGTTCTCCA 493 663 862 Antisense
GTGTTCTCCAACACGATTCGGAGTC 504 481 877 Antisense
ATTCGGAGTCTGTTGCTTGTCCATG 642 9 892 Antisense
GTCCATGAGAGTGCTCGAGCGCTGA 332 477 910 Antisense
GGTCCAGTTTGATACACAGGAACCG 443 481 972 Antisense
ACCGGAAGCAACATACATCTACTCG 356 87 993 Antisense
CATCTACTCGAGAATCAACCCAATC 434 211 1008 Antisense
Sequence Source Affymetrix Proprietary Database