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[180841_at]

Description C32H11.5 /REP_DB=WormBase Gene ID /WP=CE19712 /TR=Q9XUH6 /GB=CAB05132.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 82      4grp_total > 50      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 851
1 2 3 4 range
A 49.2
(-2.8)
A 		811.7
(3)
P 		521.6
(0.8)
P 		27.2
(-3)
A 		785
B 23.5
(-3)
A 		779.7
(2.4)
P 		860.6
(3)
P 		29.7
(-3)
A 		837
C 75.5
(-2.5)
A 		811.8
(3)
P 		580.1
(1.3)
P 		9.9
(-3)
A 		802
avr 49.4
(-2.8) 		801.1
(3) 		654.1
(1.9) 		22.3
(-3) 		779

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 80.1
(-3)
A 		553.6
(3)
P 		292.4
(-0.3)
P 		450.1
(1.7)
P 		339
(0.3)
P 		178.5
(-1.8)
P 		474
B 87.7
(-3)
A 		421.9
(3)
P 		356.6
(1.8)
P 		372.2
(2.1)
P 		390.8
(2.4)
P 		173.1
(-1.5)
P 		334
C 117.9
(-3)
P 		428.3
(2.8)
P 		260.5
(-0.4)
P 		414.6
(2.5)
P 		441.2
(3)
P 		228.2
(-1)
P 		323
avr 95.2
(-3) 		467.9
(3) 		303.2
(0.3) 		412.3
(2.1) 		390.3
(1.8) 		193.3
(-1.4) 		373
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 17.9
(-2.5)
A 		176.2
(3)
P 		136.3
(1.6)
P 		4
(-3)
A 		172
B 7.5
(-3)
A 		192.6
(2.8)
P 		199.4
(3)
P 		6.3
(-3)
A 		193
C 25
(-2.4)
A 		233.4
(3)
P 		202.2
(2.2)
P 		1.7
(-3)
A 		232
avr 16.8
(-2.6) 		200.7
(3) 		179.3
(2.3) 		4
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 14.8
(-3)
A 		196.9
(3)
P 		63.7
(-1.4)
P 		114.2
(0.3)
P 		102.3
(-0.1)
P 		43.5
(-2.1)
P 		182
B 30.5
(-3)
A 		140.4
(2.1)
P 		86.6
(-0.4)
P 		98.6
(0.2)
P 		158.8
(3)
P 		64.6
(-1.4)
P 		128
C 43.7
(-3)
P 		130.7
(2.3)
P 		66.3
(-1.6)
P 		83.4
(-0.6)
P 		142.8
(3)
P 		76.4
(-1)
P 		99
avr 29.7
(-3) 		156
(3) 		72.2
(-1) 		98.7
(0.3) 		134.6
(2) 		61.5
(-1.5) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8926
Sequence Type Exemplar sequence
Representative Public ID C32H11.5 NCBI
Target Description C32H11.5 /REP_DB=WormBase Gene ID /WP=CE19712 /TR=Q9XUH6 /GB=CAB05132.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070066 NCBI Caenorhabditis elegans C32H11.5 (C32H11.5) mRNA, complete cds. 11/11 None
SNAP00000038554 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12923620:12924333:-1 11/11 None
GENEFINDER00000038571 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12923620:12924333:-1 11/11 None
C32H11.5 ENSEMBL cdna:known chromosome:CEL140:IV:12923495:12924348:-1 gene:C32H11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12923625-12924339(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32H11.5
Entrez Gene 183129 Entrez gene
SwissProt Q9XUH6 EMBL-EBI
WormBase CE19712 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05132 Hypothetical protein C32H11.5 [Caenorhabditis elegans] ref|NP_502467.1| C32H11.5 [Caenorhabditis elegans] 2.0E-92
blast CAB05133 Hypothetical protein C32H11.6 [Caenorhabditis elegans] ref|NP_502468.1| C32H11.6 [Caenorhabditis elegans] 9.0E-63
blast CAB05137 Hypothetical protein C32H11.11 [Caenorhabditis elegans] emb|CAB05134.1| Hypothetical protein C32H11.8 [Caenorhabditis elegans] ref|NP_502473.1| C32H11.11 [Caenorhabditis elegans] ref|NP_502470.1| C32H11.8 [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.9E-19
Sequence
Target Sequence 
>C. ELEGANS:180841_AT
cactgtagcttttgctgcacctactcctgctcctactctaactgttgctgaggagatgga
ggcaatttttcaaaatttgacggaagaagctcaaaatgattatttccaaattctcttcga
tcacacattgacccttgccgagttggaccaaaagtgggacgagtgggcggagaagcacgg
aattgctgacaaatgggctgtatacacttccaaatggcaagccagaaaagaaaagttcaa
tgagaccacagtctctgtgattgaaagacttccatcaacttacaaaatgctttctgagat
caccgccaacagaaatcaaactctttctcaagttgaaaccgctttggaagaactcaagga
aaaatttaatttggaagttcaacttatccttattctgtcaaaaactctcattctcaatga
ggaaattgtgttgggcggtggaccgattgaagttggaaatgaggtcactggaaactcgtt
cagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGTAGCTTTTGCTGCACCTACT 534 195 48 Antisense
TGCTCCTACTCTAACTGTTGCTGAG 343 581 75 Antisense
ATTTCCAAATTCTCTTCGATCACAC 22 17 149 Antisense
AGTGGGACGAGTGGGCGGAGAAGCA 631 57 200 Antisense
GGGCTGTATACACTTCCAAATGGCA 172 493 242 Antisense
AAAATGCTTTCTGAGATCACCGCCA 300 133 331 Antisense
ATCACCGCCAACAGAAATCAAACTC 264 23 346 Antisense
AACTCTTTCTCAAGTTGAAACCGCT 226 141 366 Antisense
GTTCAACTTATCCTTATTCTGTCAA 511 445 424 Antisense
GAAATTGTGTTGGGCGGTGGACCGA 257 363 469 Antisense
AGGTCACTGGAAACTCGTTCAGAAG 481 57 509 Antisense
Sequence Source Affymetrix Proprietary Database