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[180840_at]

Description C55F2.2 /REP_DB=WormBase Gene ID /WP=CE06994 /TR=Q9GYQ2 /GB=AAF99902.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 87      6grp_total > 57      4grp_total > 12      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1887
1 2 3 4 range
A 1384.2
(-1)
P 		1079
(-2)
P 		770.1
(-3)
P 		2628.9
(3)
P 		1859
B 1405.5
(-1)
P 		959.6
(-2.4)
P 		780
(-3)
P 		2638.2
(3)
P 		1858
C 1458
(-1)
P 		850.8
(-3)
P 		883.5
(-2.9)
P 		2657.1
(3)
P 		1806
avr 1415.9
(-1) 		963.1
(-2.5) 		811.2
(-3) 		2641.4
(3) 		1830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 978
1 2 3 4 5 6 range
A 1412.4
(2.1)
P 		1173.4
(-0.6)
P 		1290.4
(0.7)
P 		1058.1
(-1.8)
P 		952.6
(-3)
P 		1495.4
(3)
P 		543
B 1139.4
(-1.9)
P 		1172.2
(-1.6)
P 		1190.2
(-1.4)
P 		1033.9
(-3)
P 		1040.7
(-2.9)
P 		1632.5
(3)
P 		599
C 915.2
(-1.3)
P 		1161.1
(0.3)
P 		777.7
(-2.2)
P 		1181.8
(0.4)
P 		654.9
(-3)
P 		1583.1
(3)
P 		928
avr 1155.7
(-0.6) 		1168.9
(-0.5) 		1086.1
(-1.2) 		1091.3
(-1.2) 		882.7
(-3) 		1570.3
(3) 		688
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 504
(3)
P 		234.2
(-2.3)
P 		201.3
(-3)
P 		384.8
(0.6)
P 		303
B 448.2
(1.2)
P 		237
(-2.1)
P 		180.7
(-3)
P 		562.2
(3)
P 		382
C 482.6
(3)
P 		244.6
(-3)
P 		307.9
(-1.4)
P 		448
(2.1)
P 		238
avr 478.3
(3) 		238.6
(-2.8) 		230
(-3) 		465
(2.7) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 260.4
(-3)
P 		417.3
(3)
P 		281
(-2.2)
P 		268.4
(-2.7)
P 		287.5
(-2)
P 		364.1
(1)
P 		157
B 396.5
(-0.8)
P 		390.2
(-0.9)
P 		289
(-2.7)
P 		273.8
(-3)
P 		422.8
(-0.3)
P 		608.7
(3)
P 		335
C 339.2
(-0.4)
P 		354.3
(-0.2)
P 		197.9
(-3)
P 		237.7
(-2.3)
P 		211.9
(-2.7)
P 		530
(3)
P 		332
avr 332
(-1.1) 		387.3
(0.2) 		256
(-3) 		260
(-2.9) 		307.4
(-1.7) 		500.9
(3) 		245
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180840_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8766
Sequence Type Exemplar sequence
Representative Public ID C55F2.2 NCBI
Target Description C55F2.2 /REP_DB=WormBase Gene ID /WP=CE06994 /TR=Q9GYQ2 /GB=AAF99902.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068912
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068912 NCBI Caenorhabditis elegans C55F2.2 (C55F2.2) mRNA, complete cds. None
C55F2.2 ENSEMBL cdna:known chromosome:CEL140:IV:7895701:7897526:-1 gene:C55F2.2 None
SNAP00000037525 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7895701:7896462:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7896083-7896976(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55F2.2
Entrez Gene 183853 Entrez gene
SwissProt Q9GYQ2 EMBL-EBI
WormBase CE31458 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99902 Hypothetical protein C55F2.2 [Caenorhabditis elegans] ref|NP_501313.2| C55F2.2 [Caenorhabditis elegans] 5.0E-87
blast CAE70903 Hypothetical protein CBG17700 [Caenorhabditis briggsae] 6.0E-84
blast AAF99902 Hypothetical protein C55F2.2 [Caenorhabditis elegans] ref|NP_501313.2| C55F2.2 [Caenorhabditis elegans] 1.0E-75
blast CAE70903 Hypothetical protein CBG17700 [Caenorhabditis briggsae] 7.0E-74
blast T29606 hypothetical protein C55F2.2 - Caenorhabditis elegans 8.0E-48
blast T29606 hypothetical protein C55F2.2 - Caenorhabditis elegans 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR008597 EMBL-EBI Destabilase 9.5E-69
Pfam IPR008597 EMBL-EBI Destabilase 1.7E-62
Sequence
Target Sequence 
>C. ELEGANS:180840_AT
gttacagttacagttatctcgctactggtcagcgtaacgcatcaattgcttatgtttgat
aaagtggaagacgatcatccatgtctgcttgcaatgtgtgatcaagattctggatgtgta
ccacttggatgctcagttgatcaatttgatcgaattggttgtggctattttaggctcaat
atttatcaattccagcaatgctaccaaccgggaaaaaaagacgaagatacggaaaacgaa
gcctggatgaactgtgctcaagattatcaatgttctgcttcatgtatccgtgtaagtttt
ctcgaagatcgtagatcaaacatgtacatagtctgcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACAGTTACAGTTATCTCGCTAC 206 447 22 Antisense
ATCTCGCTACTGGTCAGCGTAACGC 210 33 37 Antisense
GTAACGCATCAATTGCTTATGTTTG 206 463 55 Antisense
GATCATCCATGTCTGCTTGCAATGT 158 421 94 Antisense
GTACCACTTGGATGCTCAGTTGATC 43 457 139 Antisense
GGTTGTGGCTATTTTAGGCTCAATA 501 507 178 Antisense
CAGCAATGCTACCAACCGGGAAAAA 373 203 214 Antisense
AAGCCTGGATGAACTGTGCTCAAGA 553 149 260 Antisense
AATGTTCTGCTTCATGTATCCGTGT 156 165 290 Antisense
GTATCCGTGTAAGTTTTCTCGAAGA 517 455 305 Antisense
TCAAACATGTACATAGTCTGCCCAG 200 629 337 Antisense
Sequence Source Affymetrix Proprietary Database