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[180839_at]

Description F54B11.7 /REP_DB=WormBase Gene ID /WP=CE05931 /TR=Q20742 /GB=CAA94139.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 11.5
(-2.4)
A 		5.9
(-3)
A 		14
(-2.2)
A 		66.5
(3)
A 		61
B 8.6
(-3)
A 		49.3
(3)
A 		9.7
(-2.8)
A 		48.6
(2.9)
A 		41
C 19.9
(-1.8)
A 		49.8
(3)
A 		12.3
(-3)
A 		32.6
(0.2)
A 		38
avr 13.3
(-2.8) 		35
(0.7) 		12
(-3) 		49.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 13.8
(-1.6)
A 		2.5
(-3)
A 		3.4
(-2.9)
A 		50.9
(3)
A 		10.9
(-2)
A 		27
(0)
A 		48
B 35.9
(3)
A 		12.5
(-1.5)
A 		25.8
(1.1)
A 		12.8
(-1.4)
A 		5
(-2.9)
A 		4.5
(-3)
A 		31
C 4.1
(-3)
A 		36.3
(0.7)
A 		14
(-1.9)
A 		56.3
(3)
A 		14.9
(-1.8)
A 		5.2
(-2.9)
A 		52
avr 17.9
(-1.5) 		17.1
(-1.6) 		14.4
(-2.2) 		40
(3) 		10.3
(-3) 		12.2
(-2.6) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.2
(-0.9)
A 		1.3
(-3)
A 		3.7
(-1.3)
A 		9.7
(3)
A 		8
B 2.7
(-2.7)
A 		12.2
(3)
A 		2.2
(-3)
A 		10.4
(1.9)
A 		10
C 6.6
(-1.6)
A 		14.3
(3)
A 		4.3
(-3)
A 		5.5
(-2.3)
A 		10
avr 4.5
(-1.9) 		9.3
(3) 		3.4
(-3) 		8.5
(2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.5
(-2.1)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		12.9
(3)
A 		3.3
(-1.7)
A 		6.6
(-0.1)
A 		12
B 12.5
(3)
A 		4.2
(-1.6)
A 		6.3
(-0.4)
A 		3.4
(-2.1)
A 		2.1
(-2.8)
A 		1.7
(-3)
A 		11
C 1.5
(-3)
A 		11.1
(2.9)
A 		3.6
(-1.7)
A 		11.3
(3)
A 		4.8
(-1)
A 		1.8
(-2.8)
A 		10
avr 5.5
(-0.8) 		5.4
(-0.9) 		3.5
(-2.9) 		9.2
(3) 		3.4
(-3) 		3.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17788
Sequence Type Exemplar sequence
Representative Public ID F54B11.7 NCBI
Target Description F54B11.7 /REP_DB=WormBase Gene ID /WP=CE05931 /TR=Q20742 /GB=CAA94139.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077877(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077877 NCBI Caenorhabditis elegans F54B11.7 (F54B11.7) mRNA, complete cds. 11/11 None
GENEFINDER00000008303 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13598390:13601608:1 11/11 None
SNAP00000008292 ENSEMBL cdna:SNAP chromosome:CEL140:X:13600355:13601378:1 11/11 None
F54B11.7 ENSEMBL cdna:known chromosome:CEL140:X:13600355:13601314:1 gene:F54B11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13600354-13601314(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54B11.7
Entrez Gene 186214 Entrez gene
SwissProt Q20742 EMBL-EBI
WormBase CE05931 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94139 Hypothetical protein F54B11.7 [Caenorhabditis elegans] ref|NP_510278.1| F54B11.7 [Caenorhabditis elegans] 1.0E-146
blast CAA94138 Hypothetical protein F54B11.6 [Caenorhabditis elegans] ref|NP_510277.1| BMP receptor Associated protein family member (bra-1) [Caenorhabditis elegans] 1.0E-104
blast CAA94139 Hypothetical protein F54B11.7 [Caenorhabditis elegans] ref|NP_510278.1| F54B11.7 [Caenorhabditis elegans] 4.0E-94
blast CAA94139 Hypothetical protein F54B11.7 [Caenorhabditis elegans] ref|NP_510278.1| F54B11.7 [Caenorhabditis elegans] 8.0E-94
blast CAE69140 Hypothetical protein CBG15170 [Caenorhabditis briggsae] 7.0E-59
blast AAB69940 Hypothetical protein T23B12.10 [Caenorhabditis elegans] ref|NP_505185.1| T23B12.10 [Caenorhabditis elegans] 2.0E-13
blast AAB69940 Hypothetical protein T23B12.10 [Caenorhabditis elegans] ref|NP_505185.1| T23B12.10 [Caenorhabditis elegans] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 2.8E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000008292 1 263-280
Sequence
Target Sequence 
>C. ELEGANS:180839_AT
agagcgatagcggttcggcagacgagttgaaatattcgaatctgctggtcgaaatcgcca
acatcaaccattcagttaaacagcttctaactgatatggatacggtgaaagaagatgtca
acaacaccaagaacgctgtctccaagattgaaacaacagcactcaatgctgaaaagcttg
atgaagtgtacgggatgatacacgagatgcgtggaatcctctacgtcattgctacgaagg
tggatgaaatccatcgagcgaatggaatttccaccatcaacgccaacgtcgccacacaag
gtgtagccgcagcagctccacttaacgtcactccaccatcatcagcagcggtcaagcagg
tcacaaagttttgccacttgtgcaagagaaacaaccatgccactgaaaactgcctcaagt
tttcttggttcctacctcgcagagagcaagcctttaaacgtaggatgtgcatcagatgta
tggaaaccggagtacgcaacacagcgaatgtgcacgtcaactgcagcatggctcacgtgg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCGATAGCGGTTCGGCAGACGA 369 67 272 Antisense
TCTGCTGGTCGAAATCGCCAACATC 596 609 312 Antisense
CACCAAGAACGCTGTCTCCAAGATT 148 201 396 Antisense
GATGCGTGGAATCCTCTACGTCATT 692 413 477 Antisense
ACGTCGCCACACAAGGTGTAGCCGC 307 95 557 Antisense
CCACCATCATCAGCAGCGGTCAAGC 409 273 604 Antisense
CAACCATGCCACTGAAAACTGCCTC 170 187 663 Antisense
ACTGCCTCAAGTTTTCTTGGTTCCT 195 99 680 Antisense
GTTCCTACCTCGCAGAGAGCAAGCC 361 441 699 Antisense
GGAAACCGGAGTACGCAACACAGCG 277 527 753 Antisense
TCAACTGCAGCATGGCTCACGTGGA 705 629 788 Antisense
Sequence Source Affymetrix Proprietary Database