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[180838_at]

Description ZK430.1 /REP_DB=WormBase Gene ID /WP=CE05078 /TR=Q23495 /GB=AAA83581.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 84      6grp_total > 48      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 616
1 2 3 4 range
A 1125.6
(3)
P 		510
(-3)
P 		696.9
(-1.2)
P 		943.6
(1.2)
P 		616
B 1098.5
(3)
P 		640.3
(-3)
P 		908.5
(0.5)
P 		848.1
(-0.3)
P 		458
C 1008.1
(3)
P 		833.1
(-1.5)
P 		793.5
(-2.5)
P 		772.4
(-3)
P 		236
avr 1077.4
(3) 		661.1
(-3) 		799.6
(-1) 		854.7
(-0.2) 		416

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 589
1 2 3 4 5 6 range
A 771.1
(1.4)
P 		772.3
(1.4)
P 		416.6
(-3)
P 		489.2
(-2.1)
P 		519.5
(-1.7)
P 		903.3
(3)
P 		487
B 660.1
(1.4)
P 		583
(0.4)
P 		314.7
(-3)
P 		526.8
(-0.3)
P 		461.5
(-1.1)
P 		783.4
(3)
P 		469
C 678.1
(1.5)
P 		595.1
(-0)
P 		533
(-1.2)
P 		434.3
(-3)
P 		501.8
(-1.8)
P 		759.8
(3)
P 		326
avr 703.1
(1.3) 		650.1
(0.5) 		421.4
(-3) 		483.4
(-2.1) 		494.3
(-1.9) 		815.5
(3) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 409.8
(3)
P 		110.7
(-3)
P 		182.2
(-1.6)
P 		138.1
(-2.5)
P 		299
B 350.3
(3)
P 		158.1
(-3)
P 		210.5
(-1.4)
P 		180.7
(-2.3)
P 		192
C 333.7
(3)
P 		239.5
(0.2)
P 		276.6
(1.3)
P 		130.2
(-3)
P 		204
avr 364.6
(3) 		169.4
(-2.4) 		223.1
(-1) 		149.7
(-3) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 142.2
(-1.3)
P 		274.7
(3)
P 		90.7
(-3)
P 		124.1
(-1.9)
P 		156.8
(-0.8)
P 		219.9
(1.2)
P 		184
B 229.7
(1.3)
P 		194.1
(0.3)
P 		76.4
(-3)
P 		139.5
(-1.2)
P 		187.5
(0.1)
P 		292.1
(3)
P 		216
C 251.4
(2.9)
P 		181.6
(0.4)
P 		135.7
(-1.3)
P 		87.3
(-3)
P 		162.4
(-0.3)
P 		254.3
(3)
P 		167
avr 207.8
(1.2) 		216.8
(1.5) 		100.9
(-3) 		117
(-2.4) 		168.9
(-0.4) 		255.4
(3) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5507
Sequence Type Exemplar sequence
Representative Public ID ZK430.1 NCBI
Target Description ZK430.1 /REP_DB=WormBase Gene ID /WP=CE05078 /TR=Q23495 /GB=AAA83581.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062381 NCBI Caenorhabditis elegans ZK430.1 (ZK430.1) mRNA, complete cds. 11/11 None
SNAP00000005694 ENSEMBL cdna:SNAP chromosome:CEL140:II:4429927:4432487:1 11/11 None
GENEFINDER00000005704 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4429927:4432487:1 11/11 None
ZK430.1 ENSEMBL cdna:known chromosome:CEL140:II:4425201:4432575:1 gene:ZK430.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4425199-4432486(+) 99.96 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK430.1
Entrez Gene 173779 Entrez gene
SwissProt Q23495 EMBL-EBI
WormBase CE05078 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18805.1.S1_S_AT similar to Protein BAP28 cfa
CANINE_2:CFAAFFX.17098.1.S1_AT similar to Protein BAP28 cfa
DROSOPHILA_2:1630466_AT dm
DROSGENOME1:141566_AT dm
CHICKEN:GGAAFFX.25411.1.S1_S_AT similar to Protein BAP28 gga
CHICKEN:GGAAFFX.9130.1.S1_AT similar to Protein BAP28 gga
HG-U133_PLUS_2:232414_AT HEAT repeat containing 1 hs
HG-U133B:232414_AT HEAT repeat containing 1 hs
HG-U133_PLUS_2:218594_AT HEAT repeat containing 1 hs
HG-U133A:218594_AT HEAT repeat containing 1 hs
HG-U133A_2:218594_AT HEAT repeat containing 1 hs
HG-U133A:218595_S_AT HEAT repeat containing 1 hs
HG-U133_PLUS_2:218595_S_AT HEAT repeat containing 1 hs
HG-U133A_2:218595_S_AT HEAT repeat containing 1 hs
U133_X3P:G8922377_3P_AT HEAT repeat containing 1 hs
U133_X3P:HS2.374141.1.S1_3P_S_AT HEAT repeat containing 1 hs
U133_X3P:HS2.374141.1.S1_3P_AT HEAT repeat containing 1 hs
U133_X3P:HS.257300.0.S1_3P_AT HEAT repeat containing 1 hs
U133_X3P:1556348_3P_AT HEAT repeat containing 1 hs
HG-U133_PLUS_2:1556348_AT HEAT repeat containing 1 hs
HG-U95D:83870_AT HEAT repeat containing 1 hs
HG-U133_PLUS_2:228351_AT HEAT repeat containing 1 hs
HG-U133B:228351_AT HEAT repeat containing 1 hs
HU35KSUBA:AA152069_AT HEAT repeat containing 1 hs
U133_X3P:HS.4082.3.S1_3P_AT HEAT repeat containing 1 hs
HG-U133_PLUS_2:244381_AT HEAT repeat containing 1 hs
HG-U133B:244381_AT HEAT repeat containing 1 hs
HG-U95C:49706_R_AT HEAT repeat containing 1 hs
HG-U95D:74644_AT HEAT repeat containing 1 hs
HG-U95D:91993_AT HEAT repeat containing 1 hs
HU35KSUBD:RC_AA598685_AT HEAT repeat containing 1 hs
HU35KSUBB:RC_H56965_AT HEAT repeat containing 1 hs
MOE430B:1437965_AT HEAT repeat containing 1 mm
MOUSE430_2:1437965_AT HEAT repeat containing 1 mm
MOUSE430A_2:1424522_AT HEAT repeat containing 1 mm
MOE430A:1424522_AT HEAT repeat containing 1 mm
MOUSE430_2:1424522_AT HEAT repeat containing 1 mm
MG-U74BV2:108093_AT HEAT repeat containing 1 mm
MOE430A:1452419_AT HEAT repeat containing 1 mm
MOUSE430A_2:1452419_AT HEAT repeat containing 1 mm
MOUSE430_2:1452419_AT HEAT repeat containing 1 mm
MOE430B:1459039_AT HEAT repeat containing 1 (Heatr1), mRNA mm
MOUSE430_2:1459039_AT HEAT repeat containing 1 (Heatr1), mRNA mm
MU19KSUBB:TC31037_AT HEAT repeat containing 1 (Heatr1), mRNA mm
MU19KSUBB:TC31037_G_AT HEAT repeat containing 1 (Heatr1), mRNA mm
MU19KSUBB:TC31038_AT HEAT repeat containing 1 (Heatr1), mRNA mm
RAE230B:1383685_AT similar to BAP28 protein rn
RAT230_2:1383685_AT similar to BAP28 protein rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83581 Hypothetical protein ZK430.1 [Caenorhabditis elegans] ref|NP_494782.1| ZK430.1 [Caenorhabditis elegans] sp|Q23495|HEATR_CAEEL Hypothetical protein ZK430.1 in chromosome II 0.0
blast CAE60138 Hypothetical protein CBG03684 [Caenorhabditis briggsae] 0.0
blast CAI13776 protein BAP28 (FLJ10359) [Homo sapiens] 7.0E-42
Sequence
Target Sequence 
>C. ELEGANS:180838_AT
tttgccaatgatctctacacttcgttcaactcgttggctcttccatatttcggtcgaatt
ttggaaatttctgcgctcgtcctgaagaaatgcaatgcgacgctgctgctcggaacagat
gagctgttgttgagtggaaaacgaggatcaattgaggcattagagacggatctggcactg
acacttgcgattgatgtcatttcgaatgctgctaggcacagagactttttcactgttgat
cgttgtcaattggtgtcggatgtgatagtcaatgaattggttaacacgaaggttgaaggc
catgagaaacgttgttccgatcacctggttccagccatctaccgtatcggaaatgctgat
ccggacagcttcccagagcttctgaataagataatgctcaagacaagagattcgagagca
aagatccgttatcgtgctctcattgttctcgagttgttgatcaaggagatcggagatgga
gtacaaccgcatctttcgattcttcttccgttccttaatgagctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCCAATGATCTCTACACTTCGT 504 667 4336 Antisense
TACACTTCGTTCAACTCGTTGGCTC 443 643 4351 Antisense
AAATGCAATGCGACGCTGCTGCTCG 537 117 4423 Antisense
GGATCTGGCACTGACACTTGCGATT 130 513 4503 Antisense
TGAGAAACGTTGTTCCGATCACCTG 436 567 4638 Antisense
TTCCAGCCATCTACCGTATCGGAAA 264 697 4664 Antisense
AAATGCTGATCCGGACAGCTTCCCA 134 119 4686 Antisense
AAAGATCCGTTATCGTGCTCTCATT 606 121 4755 Antisense
GTGCTCTCATTGTTCTCGAGTTGTT 515 479 4769 Antisense
TGGAGTACAACCGCATCTTTCGATT 516 547 4812 Antisense
CTTCTTCCGTTCCTTAATGAGCTTA 132 221 4837 Antisense
Sequence Source Affymetrix Proprietary Database