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[180837_at]

Description T08A9.2 /REP_DB=WormBase Gene ID /WP=CE04917 /TR=Q22341 /GB=AAA81419.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 55      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 77      6grp_total > 55      4grp_total > 41      6grp_highest_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 971
1 2 3 4 range
A 636.7
(-3)
P 		1312.9
(1.5)
P 		1531.3
(3)
P 		857.3
(-1.5)
P 		895
B 573.2
(-3)
P 		1511.7
(3)
P 		1386.4
(2.2)
P 		962.9
(-0.5)
P 		939
C 663.7
(-3)
P 		1544.1
(3)
P 		1314.2
(1.4)
P 		970.3
(-0.9)
P 		880
avr 624.5
(-3) 		1456.2
(3) 		1410.6
(2.7) 		930.2
(-0.8) 		832

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1242
1 2 3 4 5 6 range
A 1596.7
(0.5)
P 		1287.4
(-1.4)
P 		1993.9
(3)
P 		1269.1
(-1.6)
P 		1041.3
(-3)
P 		1357.9
(-1)
P 		953
B 1908.9
(3)
P 		1574.6
(0.5)
P 		1672.6
(1.3)
P 		1097.3
(-3)
P 		1135
(-2.7)
P 		1639.9
(1)
P 		812
C 1436.2
(-1.1)
P 		1391.3
(-1.3)
P 		1241.6
(-2)
P 		1286.3
(-1.8)
P 		1040.1
(-3)
P 		2281.9
(3)
P 		1242
avr 1647.3
(2) 		1417.8
(0) 		1636
(1.9) 		1217.6
(-1.7) 		1072.1
(-3) 		1759.9
(3) 		688
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 231.8
(-0.7)
P 		285
(0.5)
P 		400.3
(3)
P 		125.5
(-3)
P 		275
B 182.8
(-3)
P 		373.3
(3)
P 		321.3
(1.4)
P 		205.2
(-2.3)
P 		191
C 219.7
(-1.9)
P 		443.9
(2.7)
P 		458.1
(3)
P 		163.6
(-3)
P 		295
avr 211.4
(-1.8) 		367.4
(2.3) 		393.2
(3) 		164.8
(-3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 505
1 2 3 4 5 6 range
A 294.3
(-3)
P 		457.9
(3)
P 		434.2
(2.1)
P 		321.9
(-2)
P 		314.2
(-2.3)
P 		330.6
(-1.7)
P 		164
B 664.2
(3)
P 		524.1
(0.8)
P 		406.1
(-1.1)
P 		290.6
(-3)
P 		461.1
(-0.3)
P 		611.5
(2.2)
P 		374
C 532.3
(0.2)
P 		424.5
(-1)
P 		316
(-2.3)
P 		258.7
(-3)
P 		336.6
(-2.1)
P 		763.9
(3)
P 		505
avr 496.9
(1.5) 		468.8
(0.8) 		385.4
(-1) 		290.4
(-3) 		370.6
(-1.3) 		568.7
(3) 		278
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180837_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17014
Sequence Type Exemplar sequence
Representative Public ID T08A9.2 NCBI
Target Description T08A9.2 /REP_DB=WormBase Gene ID /WP=CE04917 /TR=Q22341 /GB=AAA81419.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171722, NM_076839
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001758 ENSEMBL cdna:SNAP chromosome:CEL140:X:7329927:7330512:1 None
GENEFINDER00000001767 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7327553:7330512:1 None
NM_076839 NCBI Caenorhabditis elegans T08A9.2 (T08A9.2) mRNA, complete cds. None
SNAP00000001759 ENSEMBL cdna:SNAP chromosome:CEL140:X:7331136:7331674:1 None
NM_171722 NCBI Caenorhabditis elegans T08A9.11 (T08A9.11) mRNA, complete cds. None
T08A9.11 ENSEMBL cdna:known chromosome:CEL140:X:7329766:7330569:1 gene:T08A9.11 None
GENEFINDER00000001761 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7331136:7331674:1 None
T08A9.2 ENSEMBL cdna:known chromosome:CEL140:X:7331134:7331771:1 gene:T08A9.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7329925-7331673(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T08A9.11
T08A9.2
Entrez Gene 188262 Entrez gene
259716 Entrez gene
SwissProt Q8MPX6 EMBL-EBI
Q22341 EMBL-EBI
WormBase CE31230 Wormbase
CE31232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast F89567 protein T08A9.3 [imported] - Caenorhabditis elegans 1.0E-106
blast NP_509239 T08A9.3 [Caenorhabditis elegans] gb|AAA81418.2| Synaptogyrin family protein 1 [Caenorhabditis elegans] sp|O76735|SNG1_CAEEL Synaptogyrin homolog 1 gb|AAC27798.1| synaptogyrin homolog [Caenorhabditis elegans] 1.0E-102
blast CAE65874 Hypothetical protein CBG11023 [Caenorhabditis briggsae] 7.0E-94
blast NP_509240 T08A9.2 [Caenorhabditis elegans] gb|AAM69086.1| Hypothetical protein T08A9.2 [Caenorhabditis elegans] 2.0E-77
blast NP_509240 T08A9.2 [Caenorhabditis elegans] gb|AAM69086.1| Hypothetical protein T08A9.2 [Caenorhabditis elegans] 7.0E-76
blast G89567 protein T08A9.2 [imported] - Caenorhabditis elegans 1.0E-71
blast CAE65875 Hypothetical protein CBG11024 [Caenorhabditis briggsae] 3.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 4.6E-67
Pfam IPR008253 EMBL-EBI Marvel 1.1E-27
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.0E-64
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.0E-64
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.2E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741833.1 1 7-26
NP_509240.2 1 5-27
T08A9.11 1 7-26
T08A9.2 1 5-27
GENEFINDER00000001767 3 43-65,86-105,125-147
SNAP00000001758 1 7-26
SNAP00000001759 1 5-27
GENEFINDER00000001761 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:180837_AT
tgcaatggagagccagcagcgcacgtccgtgtgaagttgtacgaaaaggaaacaactctt
gatgtgctattagatgaaggaacaactgatgaaaatggtgaattcaagctgcagggacac
aaggtggaagtcagtaccattgatccaaagttgaatatctaccacaagtgcaactacaaa
ggagtaagctattccaatatttgttatcaaaaatcttctctcactattccggacaatttt
gttactgaaggagaggttccacaaaaaacattcaatgtaggaatcatcaatcttgccaac
aagtttagcgatgtcatccgtatactcatgccttattcttctaactttcattttcttgac
gtcctgctcgacgaacgattcaccaaagacgatggaacttttgaaatggcgggatcgaag
tccgaagtcaccacaattgatccaaaattgaacatttatcacaagtgtaactatgatgga
atatgcgttcgtaaaatttcaattcttattccaacagagtatatcaccaatggagaaaaa
cctgctcgcacattcaatgttggagagctcaatctggcatccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATGGAGAGCCAGCAGCGCACG 86 577 127 Antisense
GCGCACGTCCGTGTGAAGTTGTACG 692 287 145 Antisense
TTCTCTCACTATTCCGGACAATTTT 626 691 342 Antisense
GTAGGAATCATCAATCTTGCCAACA 647 455 403 Antisense
GCGATGTCATCCGTATACTCATGCC 220 291 434 Antisense
TACTCATGCCTTATTCTTCTAACTT 336 645 449 Antisense
AACTTTCATTTTCTTGACGTCCTGC 430 139 469 Antisense
GACGTCCTGCTCGACGAACGATTCA 419 377 484 Antisense
ATCGAAGTCCGAAGTCACCACAATT 357 35 540 Antisense
AAACCTGCTCGCACATTCAATGTTG 80 127 664 Antisense
GGAGAGCTCAATCTGGCATCCAAAT 365 519 688 Antisense
Sequence Source Affymetrix Proprietary Database