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[180836_at]

Description Y37H2C.4 /REP_DB=WormBase Gene ID /WP=CE19092 /TR=Q9U2N0 /GB=CAB63348.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 27.5
(-1.9)
A 		71.8
(3)
A 		30.3
(-1.6)
A 		17.2
(-3)
A 		55
B 12.2
(-3)
A 		68.2
(3)
A 		36.1
(-0.4)
A 		25
(-1.6)
A 		56
C 45
(3)
A 		4.9
(-3)
A 		15.6
(-1.4)
A 		13.8
(-1.7)
A 		40
avr 28.2
(-1.1) 		48.3
(3) 		27.3
(-1.3) 		18.7
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 47.9
(0.6)
A 		45.1
(0.3)
A 		67.1
(3)
P 		42.1
(-0.1)
A 		18.7
(-2.9)
A 		18.2
(-3)
A 		49
B 14.9
(-0.8)
A 		30.3
(2.5)
A 		6.3
(-2.7)
A 		32.8
(3)
A 		9.4
(-2)
A 		4.7
(-3)
A 		28
C 8.6
(-0.2)
A 		6.1
(-1.8)
A 		12.6
(2.4)
A 		4.2
(-3)
A 		13.6
(3)
A 		12.1
(2)
A 		9
avr 23.8
(1.3) 		27.2
(2.5) 		28.7
(3) 		26.4
(2.2) 		13.9
(-2.2) 		11.7
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10
(0.4)
A 		15.6
(3)
A 		7.9
(-0.5)
A 		2.5
(-3)
A 		13
B 3.9
(-3)
A 		16.8
(3)
A 		8.4
(-0.9)
A 		5.3
(-2.3)
A 		13
C 14.9
(3)
A 		1.4
(-3)
A 		5.4
(-1.2)
A 		2.3
(-2.6)
A 		14
avr 9.6
(1.7) 		11.3
(3) 		7.2
(-0.1) 		3.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.8
(-0.7)
A 		16.1
(3)
A 		14.6
(2.2)
P 		10.7
(0.2)
A 		5.6
(-2.4)
A 		4.4
(-3)
A 		12
B 5.2
(-0.4)
A 		10.1
(3)
A 		1.5
(-3)
A 		8.7
(2)
A 		3.8
(-1.4)
A 		1.7
(-2.9)
A 		9
C 3.2
(0.9)
A 		1.9
(-1.3)
A 		3.2
(0.9)
A 		0.9
(-3)
A 		4.4
(3)
A 		4
(2.3)
A 		4
avr 5.7
(-0.7) 		9.4
(3) 		6.4
(0) 		6.8
(0.4) 		4.6
(-1.8) 		3.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13015
Sequence Type Exemplar sequence
Representative Public ID Y37H2C.4 NCBI
Target Description Y37H2C.4 /REP_DB=WormBase Gene ID /WP=CE19092 /TR=Q9U2N0 /GB=CAB63348.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075174(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075174 NCBI Caenorhabditis elegans Y37H2C.4 (Y37H2C.4) mRNA, complete cds. 10/11 None
Y37H2C.4 ENSEMBL cdna:known chromosome:CEL140:V:18273277:18274830:1 gene:Y37H2C.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027738 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18273276-18274830(+) 99.54 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2C.4
Entrez Gene 189637 Entrez gene
SwissProt Q9U2N0 EMBL-EBI
WormBase CE38236 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63348 Hypothetical protein Y37H2C.4 [Caenorhabditis elegans] ref|NP_507575.2| Y37H2C.4 [Caenorhabditis elegans] 1.0E-162
blast CAB63348 Hypothetical protein Y37H2C.4 [Caenorhabditis elegans] ref|NP_507575.2| Y37H2C.4 [Caenorhabditis elegans] 1.0E-160
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-101
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 2.0E-99
blast CAB04642 Hypothetical protein R10E8.5 [Caenorhabditis elegans] ref|NP_507571.1| R10E8.5 [Caenorhabditis elegans] 4.0E-92
blast CAB04642 Hypothetical protein R10E8.5 [Caenorhabditis elegans] ref|NP_507571.1| R10E8.5 [Caenorhabditis elegans] 2.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.2E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507575.2 5 46-68,89-111,153-175,204-226,241-263
Y37H2C.4 5 46-68,89-111,157-179,208-230,245-267
Sequence
Target Sequence 
>C. ELEGANS:180836_AT
acaaggctttctttacttggctccaattctcacgggcttgatttggggctcaatgtgctg
gtttacattgggagagtcttcaccgaaagtatatttccaagaagtgttcaatttaaaaat
tgaagaatgtgcgtatcttgcatttcacttttggcctgttaatagtgacggtgaaactcg
ccctgatctaatgtcattttcgtgtgctggtgtgatgtttctaatacttgattcccttca
ggggtcttcatttgctagtgtaatttatttcgccatcaggtgctatcaatacatatcaaa
ccagcttggaaccctaccaacacagtcacaagctctcaagtcacttcaagttcaactctt
ctactctctaatcttgcaatccgcaattccatcttttttaatgtatttacctgctaccat
cgtctacattgttccaatgctgaactttggctacaacgtggagtttccgcttctttcggt
tactattgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGGCTTTCTTTACTTGGCTCCA 306 113 273 Antisense
TGAAACTCGCCCTGATCTAATGTCA 116 571 444 Antisense
AATGTCATTTTCGTGTGCTGGTGTG 595 163 462 Antisense
CCTTCAGGGGTCTTCATTTGCTAGT 695 263 507 Antisense
TATTTCGCCATCAGGTGCTATCAAT 217 663 538 Antisense
GTCACAAGCTCTCAAGTCACTTCAA 265 465 597 Antisense
TACTCTCTAATCTTGCAATCCGCAA 608 645 634 Antisense
AATCCGCAATTCCATCTTTTTTAAT 604 167 650 Antisense
CTACCATCGTCTACATTGTTCCAAT 568 225 686 Antisense
TACAACGTGGAGTTTCCGCTTCTTT 208 643 724 Antisense
CGCTTCTTTCGGTTACTATTGCAAT 418 253 740 Antisense
Sequence Source Affymetrix Proprietary Database