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[180835_at]

Description Y43F8B.1 /REP_DB=WormBase Gene ID /WP=CE21885 /TR=Q9XWX8 /GB=CAA21508.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 91      4grp_highest_8_8 > 07      4grp_high_8_8 > 22      6grp_highest_nonorm > 65      6grp_total > 93      4grp_total > 17      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1640
1 2 3 4 range
A 536.4
(-3)
P 		872.1
(-1.1)
P 		752.1
(-1.8)
P 		1613.7
(3)
P 		1077
B 346.5
(-3)
P 		803.6
(-1.3)
P 		652.2
(-1.9)
P 		1986.4
(3)
P 		1640
C 504.7
(-3)
P 		769.2
(-1.2)
P 		640.5
(-2.1)
P 		1374.6
(3)
P 		870
avr 462.5
(-3) 		815
(-1.2) 		681.6
(-1.9) 		1658.2
(3) 		1196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 898
1 2 3 4 5 6 range
A 795.8
(-3)
P 		1126.7
(0.1)
P 		853.6
(-2.5)
P 		936.8
(-1.7)
P 		1437
(3)
P 		1093.1
(-0.2)
P 		641
B 784.3
(-3)
P 		1042.1
(-0.9)
P 		821.7
(-2.7)
P 		1200.9
(0.4)
P 		1524
(3)
P 		1097.5
(-0.5)
P 		740
C 984.8
(-1.7)
P 		983.3
(-1.7)
P 		854.2
(-2.6)
P 		790.7
(-3)
P 		1682.2
(3)
P 		913.2
(-2.2)
P 		892
avr 855
(-2.9) 		1050.7
(-1.2) 		843.2
(-3) 		976.1
(-1.9) 		1547.7
(3) 		1034.6
(-1.4) 		705
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 195.3
(-2.2)
P 		189.3
(-3)
P 		196.6
(-2.1)
P 		236.2
(3)
P 		47
B 110.5
(-3)
P 		198.5
(-1.3)
P 		151.1
(-2.2)
P 		423.3
(3)
P 		313
C 167.1
(-3)
P 		221.2
(2)
P 		223.2
(2.2)
P 		231.8
(3)
P 		65
avr 157.6
(-3) 		203
(-1) 		190.3
(-1.6) 		297.1
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 146.7
(-3)
P 		400.7
(2.3)
P 		185.9
(-2.2)
P 		237.6
(-1.1)
P 		433.6
(3)
P 		266.1
(-0.5)
P 		287
B 272.9
(-2)
P 		346.9
(-0.9)
P 		199.5
(-3)
P 		318.1
(-1.3)
P 		619.2
(3)
P 		409.2
(-0)
P 		420
C 365
(0.2)
P 		300
(-0.8)
P 		217.4
(-2.1)
P 		159
(-3)
P 		544.3
(3)
P 		305.7
(-0.7)
P 		385
avr 261.5
(-1.9) 		349.2
(-0.3) 		200.9
(-3) 		238.2
(-2.3) 		532.4
(3) 		327
(-0.7) 		332
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12541
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.1 NCBI
Target Description Y43F8B.1 /REP_DB=WormBase Gene ID /WP=CE21885 /TR=Q9XWX8 /GB=CAA21508.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075397(11), NM_182402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075397 NCBI Caenorhabditis elegans Y43F8B.1a (Y43F8B.1) mRNA, complete cds. 11/11 None
NM_182402 NCBI Caenorhabditis elegans Y43F8B.1b (Y43F8B.1) mRNA, complete cds. 11/11 None
Y43F8B.1a ENSEMBL cdna:known chromosome:CEL140:V:19537486:19546647:-1 gene:Y43F8B.1 11/11 None
Y43F8B.1b ENSEMBL cdna:known chromosome:CEL140:V:19537683:19546608:-1 gene:Y43F8B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027184 7/11 Cross Hyb Matching Probes None
GENEFINDER00000027191 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19538418-19545873(-) 96.83 100.0
Public Domain and Genome References
Ensembl Y43F8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21508 Hypothetical protein Y43F8B.1a [Caenorhabditis elegans] ref|NP_507798.2| Y43F8B.1a [Caenorhabditis elegans] 1.0E-177
blast CAD54165 Hypothetical protein Y43F8B.1b [Caenorhabditis elegans] ref|NP_872202.1| Y43F8B.1b [Caenorhabditis elegans] 1.0E-171
blast CAD54165 Hypothetical protein Y43F8B.1b [Caenorhabditis elegans] ref|NP_872202.1| Y43F8B.1b [Caenorhabditis elegans] 1.0E-170
blast CAA21508 Hypothetical protein Y43F8B.1a [Caenorhabditis elegans] ref|NP_507798.2| Y43F8B.1a [Caenorhabditis elegans] 1.0E-168
blast CAE61729 Hypothetical protein CBG05680 [Caenorhabditis briggsae] 1.0E-131
Sequence
Target Sequence 
>C. ELEGANS:180835_AT
gattcagcgcacaattgtggcccagccggcttcctatcacaaagtccaatggaatgagtt
ccccgaagagccgaaatatgaaatcggagccgtaccaaagacgaagacccaggactgggt
tccggtgaacaatgagcaaaatgagctgcaacggagcatttataagccggctcgtatgtc
ggcagtgtggccaccaccgcaggatgagcttgttaaggatggacactccccacttgtcgt
caaagccaacgaggacaccgcctggattcaacaggaccaaaatggagtgctgaaacaagc
tgtctggggaaaaacttcccgaatcaaccgagtctggccacctccagagaacgagtcaac
actttccgattttggaccccaacacatgccagtcgtccagtggccaccaccggaagccga
ggctcacgagcgtgagcaggtggaggtgctccagaaacatattccaacgaagaaaatgga
gagacagtggccaccaccgccaccacagtatcaagtagtcgaatcttccggcgaaatcga
aacccgttacaatcctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAGCGCACAATTGTGGCCCAG 401 431 150 Antisense
CGGCTTCCTATCACAAAGTCCAATG 101 241 176 Antisense
AATGAGTTCCCCGAAGAGCCGAAAT 80 163 202 Antisense
GGCTCGTATGTCGGCAGTGTGGCCA 151 539 318 Antisense
CCACCACCGCAGGATGAGCTTGTTA 688 273 340 Antisense
GACACCGCCTGGATTCAACAGGACC 210 367 403 Antisense
GGCCACCTCCAGAGAACGAGTCAAC 541 543 485 Antisense
CAACACATGCCAGTCGTCCAGTGGC 276 189 529 Antisense
ACCGCCACCACAGTATCAAGTAGTC 336 89 645 Antisense
GTAGTCGAATCTTCCGGCGAAATCG 643 455 664 Antisense
AATCGAAACCCGTTACAATCCTGCA 681 167 684 Antisense
Sequence Source Affymetrix Proprietary Database