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[180834_at]

Description F29A7.8 /REP_DB=WormBase Gene ID /WP=CE09779 /TR=O16210 /GB=AAB65270.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 4.4
(-3)
A 		8.5
(1.3)
A 		4.4
(-3)
A 		10.1
(3)
A 		6
B 4.7
(-3)
A 		6.2
(0.8)
A 		7.1
(3)
A 		5.3
(-1.5)
A 		2
C 8.2
(0.6)
A 		10.5
(3)
A 		4.8
(-3)
A 		8.4
(0.8)
A 		6
avr 5.8
(-2.2) 		8.4
(3) 		5.4
(-3) 		7.9
(2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 6.5
(0.2)
A 		6.3
(-0.1)
A 		3.9
(-3)
A 		4.2
(-2.6)
A 		8.8
(3)
A 		4.6
(-2.1)
A 		5
B 8.2
(-2.3)
A 		5.4
(-2.6)
A 		2.8
(-3)
A 		47.6
(3)
A 		2.7
(-3)
A 		2.7
(-3)
A 		45
C 8.7
(-0.4)
A 		6.6
(-1.4)
A 		3.6
(-2.7)
A 		11.8
(1)
A 		16.3
(3)
A 		3
(-3)
A 		13
avr 7.8
(-1.5) 		6.1
(-2.1) 		3.4
(-3) 		21.2
(3) 		9.3
(-1) 		3.4
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.6
(1)
A 		1.8
(3)
A 		1.2
(-3)
A 		1.5
(0)
A 		1
B 1.5
(1.8)
A 		1.5
(1.8)
A 		1.6
(3)
A 		1.1
(-3)
A 		1
C 2.7
(1.9)
A 		3
(3)
A 		1.7
(-1.9)
A 		1.4
(-3)
A 		2
avr 1.9
(1.5) 		2.1
(3) 		1.5
(-1.5) 		1.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-1.7)
A 		2.2
(1.7)
A 		0.8
(-3)
A 		1.1
(-2)
A 		2.6
(3)
A 		1.1
(-2)
A 		2
B 2.8
(-1.9)
A 		1.8
(-2.4)
A 		0.7
(-3)
A 		12.6
(3)
A 		1.1
(-2.8)
A 		1
(-2.8)
A 		12
C 3.2
(0.1)
A 		2
(-1.5)
A 		0.9
(-3)
A 		2.4
(-1)
A 		5.3
(3)
A 		1
(-2.9)
A 		4
avr 2.4
(-0.9) 		2
(-1.4) 		0.8
(-3) 		5.4
(3) 		3
(-0.1) 		1
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5497
Sequence Type Exemplar sequence
Representative Public ID F29A7.8 NCBI
Target Description F29A7.8 /REP_DB=WormBase Gene ID /WP=CE09779 /TR=O16210 /GB=AAB65270.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061951 NCBI Caenorhabditis elegans F29A7.8 (F29A7.8) mRNA, complete cds. 11/11 None
SNAP00000030196 ENSEMBL cdna:SNAP chromosome:CEL140:II:2757147:2758054:-1 10/11 None
F29A7.8 ENSEMBL cdna:known chromosome:CEL140:II:2757462:2758189:-1 gene:F29A7.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030200 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2757460-2758188(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29A7.8
Entrez Gene 185107 Entrez gene
SwissProt O16210 EMBL-EBI
WormBase CE09779 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65270 Hypothetical protein F29A7.8 [Caenorhabditis elegans] ref|NP_494352.1| F29A7.8 [Caenorhabditis elegans] 1.0E-106
blast AAB65270 Hypothetical protein F29A7.8 [Caenorhabditis elegans] ref|NP_494352.1| F29A7.8 [Caenorhabditis elegans] 5.0E-88
Sequence
Target Sequence 
>C. ELEGANS:180834_AT
ggtgtcaggggtgctgggttctaataaatatctgaatcttaccgactgtatgagtgactg
cttggcgaatccggaatgtgcagtggtgacatggcgcgtgccattgtattgtggagtttt
taaattagtagtaccgaatactgatagccttggcatcatgaaaattactaagactggaga
ggaagatgggactgttgtggggataaaggcccaactagtctccggccagtgtccatcgct
tcaaaacaagatcattgcaagcctagccccaccacaatcatttcaaaaccaactcttctc
atatacttggagcagtgacattaatggatggtctgtcacagaatgctcgacatcaatcat
agttcgatcctccagtgtgaccttgtgcgtgaagatcacaggctctgatgttctagcttc
tactggcggaggagttacacaacctgatgctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTCAGGGGTGCTGGGTTCTAAT 676 499 99 Antisense
TGAGTGACTGCTTGGCGAATCCGGA 117 569 149 Antisense
TGTGCAGTGGTGACATGGCGCGTGC 87 555 175 Antisense
GTACCGAATACTGATAGCCTTGGCA 554 457 229 Antisense
TAAAGGCCCAACTAGTCTCCGGCCA 679 639 302 Antisense
ACAAGATCATTGCAAGCCTAGCCCC 531 113 344 Antisense
CAAAACCAACTCTTCTCATATACTT 303 191 382 Antisense
CAATCATAGTTCGATCCTCCAGTGT 539 181 452 Antisense
CTCCAGTGTGACCTTGTGCGTGAAG 161 235 468 Antisense
TCTGATGTTCTAGCTTCTACTGGCG 261 609 502 Antisense
GGAGTTACACAACCTGATGCTCAAC 617 517 529 Antisense
Sequence Source Affymetrix Proprietary Database