[Home] | [Total List]

[180832_at]

Description F26D2.13 /REP_DB=WormBase Gene ID /WP=CE18643 /TR=Q9XV59 /GB=CAB04183.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 09      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 36
(-0.8)
A 		19.1
(-3)
A 		23
(-2.5)
A 		64.2
(3)
A 		45
B 31.7
(-2.3)
A 		43.7
(3)
A 		30.2
(-3)
A 		40
(1.4)
A 		14
C 10.8
(-3)
A 		22.7
(-1.7)
A 		34.9
(-0.3)
A 		64.9
(3)
A 		54
avr 26.2
(-3) 		28.5
(-2.5) 		29.4
(-2.4) 		56.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 45.4
(1)
A 		34.3
(-0.3)
A 		62.7
(3)
A 		11.4
(-3)
A 		19.5
(-2.1)
A 		13.7
(-2.7)
A 		51
B 46.5
(2.4)
A 		17.5
(-3)
A 		35.8
(0.4)
A 		49.8
(3)
A 		24.7
(-1.7)
A 		34.6
(0.2)
A 		32
C 62
(3)
P 		24.6
(-0.7)
A 		4.2
(-2.8)
A 		21.5
(-1.1)
A 		2
(-3)
A 		27.2
(-0.5)
A 		60
avr 51.3
(3) 		25.5
(-1.3) 		34.2
(0.1) 		27.6
(-1) 		15.4
(-3) 		25.2
(-1.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 13.1
(3)
A 		4.1
(-3)
A 		6
(-1.7)
A 		9.4
(0.5)
A 		9
B 10.1
(1.9)
A 		10.8
(3)
A 		7
(-3)
A 		8.5
(-0.6)
A 		4
C 3.6
(-3)
A 		6.5
(-1)
A 		12.2
(3)
A 		10.9
(2.1)
A 		9
avr 8.9
(1.3) 		7.1
(-3) 		8.4
(0.1) 		9.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.4
(0.1)
A 		12.2
(2.2)
A 		13.7
(3)
A 		2.9
(-3)
A 		5.9
(-1.3)
A 		3.3
(-2.8)
A 		11
B 16.2
(3)
A 		5.8
(-3)
A 		8.7
(-1.3)
A 		13.2
(1.3)
A 		10
(-0.6)
A 		12.9
(1.1)
A 		10
C 23
(3)
P 		7.5
(-1.2)
A 		1.1
(-2.9)
A 		4.3
(-2)
A 		0.6
(-3)
A 		9.1
(-0.7)
A 		22
avr 15.9
(3) 		8.5
(-1.3) 		7.8
(-1.7) 		6.8
(-2.3) 		5.5
(-3) 		8.4
(-1.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12531
Sequence Type Exemplar sequence
Representative Public ID F26D2.13 NCBI
Target Description F26D2.13 /REP_DB=WormBase Gene ID /WP=CE18643 /TR=Q9XV59 /GB=CAB04183.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074754 NCBI Caenorhabditis elegans F26D2.13 (F26D2.13) mRNA, complete cds. 11/11 None
SNAP00000037742 ENSEMBL cdna:SNAP chromosome:CEL140:V:16437358:16438193:-1 11/11 None
GENEFINDER00000037751 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16434592:16437886:-1 9/11 None
F26D2.13 ENSEMBL cdna:known chromosome:CEL140:V:16437358:16438193:-1 gene:F26D2.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16437357-16438193(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26D2.13
Entrez Gene 184967 Entrez gene
SwissProt Q9XV59 EMBL-EBI
WormBase CE18643 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04183 Hypothetical protein F26D2.13 [Caenorhabditis elegans] ref|NP_507155.1| F26D2.13 [Caenorhabditis elegans] 1.0E-132
blast CAB04184 Hypothetical protein F26D2.14 [Caenorhabditis elegans] ref|NP_507156.2| F26D2.14 [Caenorhabditis elegans] 1.0E-77
blast CAB04129 Hypothetical protein F16H6.3 [Caenorhabditis elegans] ref|NP_507558.1| F16H6.3 [Caenorhabditis elegans] 8.0E-77
blast CAB04183 Hypothetical protein F26D2.13 [Caenorhabditis elegans] ref|NP_507155.1| F26D2.13 [Caenorhabditis elegans] 6.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.3
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.7E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.0E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.7E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.3
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.7E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.0E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-8
Sequence
Target Sequence 
>C. ELEGANS:180832_AT
cgcctgcgacaacgttatctcagatgtttcttgcagacgttggtatggcacaactatcgt
tatagctggaaccagcgatgctcgccccgcctcatgcttctcagatggtacggcaagacc
gaatgatcaaggtatggtcagagctgctgttgaactctgcccgaaactttgtgggttctg
ctgcatgactacggcatataattgccgcaatgccgacttccctcgtctcaattgtgccac
catcgttcctgctcaatgcagagatcaacgctggcggacaatcattgcacaggattgccc
atctgcttgtgggttctgtaatctcggaggatgtgtagacgcagtcactgattgtgcaaa
tgacccttcgatttgtaacatggttggaatgcagaacttcgtaaatcagaactgccagcg
gacatgctccaggtgcccttcgtccactagtactctcatttcgtcgactgctattagctc
ctcttgcacttcgtacatcccagattcaagttcttcctgtgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCTGCGACAACGTTATCTCAGAT 423 257 144 Antisense
GCCTCATGCTTCTCAGATGGTACGG 669 281 232 Antisense
CAGAGCTGCTGTTGAACTCTGCCCG 589 205 282 Antisense
CTGCCCGAAACTTTGTGGGTTCTGC 463 235 300 Antisense
TGGGTTCTGCTGCATGACTACGGCA 90 555 315 Antisense
CAACGCTGGCGGACAATCATTGCAC 219 185 409 Antisense
CATTGCACAGGATTGCCCATCTGCT 389 217 426 Antisense
ATCAGAACTGCCAGCGGACATGCTC 196 29 548 Antisense
TCCACTAGTACTCTCATTTCGTCGA 444 587 586 Antisense
ATTTCGTCGACTGCTATTAGCTCCT 364 17 601 Antisense
CAGATTCAAGTTCTTCCTGTGCTTC 288 207 644 Antisense
Sequence Source Affymetrix Proprietary Database