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[180831_at]

Description F36D4.4 /REP_DB=WormBase Gene ID /WP=CE07192 /TR=Q20101 /GB=AAA93487.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 55      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 15      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 253.7
(2.3)
P 		194.4
(0.1)
P 		112
(-3)
P 		272.1
(3)
P 		160
B 301.7
(1.8)
P 		197.2
(-1.7)
P 		158
(-3)
P 		336.3
(3)
P 		178
C 330.6
(2.4)
P 		201.2
(-1.5)
P 		149.7
(-3)
P 		350.6
(3)
P 		201
avr 295.3
(2.2) 		197.6
(-1.1) 		139.9
(-3) 		319.7
(3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 210.3
(3)
P 		181.7
(0.8)
P 		177.4
(0.5)
P 		142.4
(-2.2)
P 		165.1
(-0.5)
P 		131.9
(-3)
P 		78
B 242.1
(3)
P 		215.2
(1.6)
P 		215.6
(1.7)
P 		123.7
(-3)
P 		163.4
(-1)
P 		137.5
(-2.3)
P 		118
C 210.1
(1.5)
P 		239.6
(3)
P 		167.4
(-0.8)
P 		130.2
(-2.7)
P 		138.8
(-2.3)
P 		125.3
(-3)
P 		114
avr 220.8
(3) 		212.2
(2.4) 		186.8
(0.7) 		132.1
(-3) 		155.8
(-1.4) 		131.6
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 92.4
(3)
P 		42.2
(-1.8)
P 		29.3
(-3)
P 		39.8
(-2)
P 		63
B 96.2
(3)
P 		48.7
(-1.8)
P 		36.6
(-3)
P 		71.7
(0.5)
P 		60
C 109.4
(3)
P 		57.8
(-2.4)
P 		52.2
(-3)
P 		59.1
(-2.3)
P 		57
avr 99.3
(3) 		49.6
(-2) 		39.4
(-3) 		56.9
(-1.2) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 38.8
(-1.8)
P 		64.6
(3)
P 		38.6
(-1.8)
P 		36.1
(-2.3)
P 		49.8
(0.3)
P 		32.1
(-3)
P 		33
B 84.2
(3)
P 		71.6
(1.5)
P 		52.4
(-0.7)
P 		32.8
(-3)
P 		66.4
(0.9)
P 		51.3
(-0.8)
P 		51
C 77.9
(3)
P 		73.1
(2.4)
P 		42.6
(-1.1)
P 		26.2
(-3)
P 		44.9
(-0.8)
P 		41.9
(-1.2)
P 		52
avr 67
(2.6) 		69.8
(3) 		44.5
(-1) 		31.7
(-3) 		53.7
(0.5) 		41.8
(-1.4) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11369
Sequence Type Exemplar sequence
Representative Public ID F36D4.4 NCBI
Target Description F36D4.4 /REP_DB=WormBase Gene ID /WP=CE07192 /TR=Q20101 /GB=AAA93487.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073035 NCBI Caenorhabditis elegans F36D4.4 (F36D4.4) mRNA, complete cds. 11/11 None
SNAP00000027391 ENSEMBL cdna:SNAP chromosome:CEL140:V:9404631:9408433:-1 11/11 None
GENEFINDER00000027396 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9404631:9408433:-1 11/11 None
F36D4.4 ENSEMBL cdna:known chromosome:CEL140:V:9404514:9408944:-1 gene:F36D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9404630-9408944(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D4.4
Entrez Gene 179322 Entrez gene
SwissProt Q20101 EMBL-EBI
WormBase CE07192 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA93487 Hypothetical protein F36D4.4 [Caenorhabditis elegans] ref|NP_505436.1| F36D4.4 [Caenorhabditis elegans] 0.0
blast CAE72168 Hypothetical protein CBG19271 [Caenorhabditis briggsae] 0.0
blast CAE60353 Hypothetical protein CBG03949 [Caenorhabditis briggsae] 2.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505436.1 6 24-46,59-81,105-127,149-171,191-213,272-294
F36D4.4 6 24-46,59-81,105-127,149-171,191-213,272-294
SNAP00000027391 6 5-27,34-56,60-82,103-125,145-167,228-250
GENEFINDER00000027396 6 4-26,39-61,108-130,152-174,194-216,275-297
Sequence
Target Sequence 
>C. ELEGANS:180831_AT
gtccaagcaatgtcacgtcacaagtacatatatgttattggatcagttctaattgttgat
ctactcttcctttgcccatattctggaattcaaatggtttcatttcttcatatcaataat
ttccttcaaattacacacggaagtacattaatcagatggtggcttcaagttcttattgga
gttcattctgtatgtcaaccactttgttatttccgaatgacagaattccgtcgtttggca
tgttgtaatccaaggcgtccgtggaataggacaaagagcttctcacaaatgaataaaagt
tttgccaatactcggtcgaatgttagagaagatgaaaacggaaacaatactgctgaaatc
gaagtgactccaaatgaaccgttgttaagaaatggagaaaatggaggaacgccctctcgc
cgttcaccaacaattgcttggacgagaggagaatcggttcgctttcgaacttatggaaat
gagattggccatcacattccaacgaagaaaaatgaatcgaaagagcctcaatgtgaaatt
gaaatgattccaatctcaactggatctgcaagtccatctgatgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCAAGCAATGTCACGTCACAAGT 477 477 802 Antisense
TAATTGTTGATCTACTCTTCCTTTG 246 635 851 Antisense
CTCTTCCTTTGCCCATATTCTGGAA 505 229 865 Antisense
GAGTTCATTCTGTATGTCAACCACT 559 397 980 Antisense
GACAGAATTCCGTCGTTTGGCATGT 369 365 1020 Antisense
GGCATGTTGTAATCCAAGGCGTCCG 525 535 1038 Antisense
GTTTTGCCAATACTCGGTCGAATGT 558 447 1100 Antisense
TCGCCGTTCACCAACAATTGCTTGG 624 597 1218 Antisense
GAGAGGAGAATCGGTTCGCTTTCGA 642 391 1245 Antisense
GAGATTGGCCATCACATTCCAACGA 51 397 1282 Antisense
GGATCTGCAAGTCCATCTGATGATT 331 511 1363 Antisense
Sequence Source Affymetrix Proprietary Database