[Home] | [Total List]

[180830_at]

Description T11F1.2 /REP_DB=WormBase Gene ID /WP=CE20053 /TR=Q9U8C5 /GB=AAC68709.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 16.9
(-3)
A 		57.3
(-0.6)
A 		43.8
(-1.4)
A 		118.9
(3)
A 		102
B 5.3
(-3)
A 		39.6
(0.7)
A 		21.3
(-1.3)
A 		60.5
(3)
A 		55
C 15.8
(3)
A 		14.1
(2.1)
A 		4.4
(-3)
A 		7
(-1.6)
A 		11
avr 12.7
(-3) 		37
(-0) 		23.2
(-1.7) 		62.1
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 54.6
(3)
A 		16.9
(-1.6)
A 		52
(2.7)
A 		7.6
(-2.7)
A 		46.3
(2)
A 		5.2
(-3)
A 		49
B 50
(3)
A 		5.6
(-3)
A 		42.4
(2)
A 		30.1
(0.3)
A 		10.8
(-2.3)
A 		14
(-1.9)
A 		44
C 20.8
(0.9)
A 		10.4
(-1.5)
A 		4.8
(-2.9)
A 		27.1
(2.4)
A 		29.6
(3)
A 		4.2
(-3)
A 		25
avr 41.8
(3) 		11
(-2.4) 		33.1
(1.5) 		21.6
(-0.6) 		28.9
(0.7) 		7.8
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.2
(-3)
A 		12.4
(0.3)
A 		11.4
(-0.2)
A 		17.4
(3)
A 		11
B 1.7
(-3)
A 		9.8
(1.3)
A 		4.9
(-1.3)
A 		12.9
(3)
A 		11
C 5.2
(3)
A 		4.1
(1.4)
A 		1.5
(-2.6)
A 		1.2
(-3)
A 		4
avr 4.4
(-3) 		8.8
(1.3) 		5.9
(-1.5) 		10.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.1
(1.2)
A 		6
(-0.8)
A 		11.3
(1.7)
A 		1.9
(-2.7)
A 		14
(3)
A 		1.3
(-3)
A 		13
B 17.4
(3)
A 		1.9
(-3)
A 		10.3
(0.3)
A 		8
(-0.6)
A 		4.4
(-2)
A 		5.2
(-1.7)
A 		16
C 7.7
(1.6)
A 		3.2
(-1.6)
A 		1.2
(-3)
A 		5.5
(0.1)
A 		9.6
(3)
A 		1.4
(-2.9)
A 		8
avr 11.7
(3) 		3.7
(-2.3) 		7.6
(0.3) 		5.1
(-1.4) 		9.3
(1.4) 		2.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5220
Sequence Type Exemplar sequence
Representative Public ID T11F1.2 NCBI
Target Description T11F1.2 /REP_DB=WormBase Gene ID /WP=CE20053 /TR=Q9U8C5 /GB=AAC68709.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062010 NCBI Caenorhabditis elegans T11F1.2 (T11F1.2) mRNA, complete cds. 11/11 None
SNAP00000009451 ENSEMBL cdna:SNAP chromosome:CEL140:II:2956174:2961878:1 10/11 None
GENEFINDER00000009459 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2955477:2962388:1 11/11 None
T11F1.2 ENSEMBL cdna:known chromosome:CEL140:II:2956060:2958186:1 gene:T11F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2956058-2958185(+) 99.24 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F1.2
Entrez Gene 188410 Entrez gene
SwissProt Q9U8C5 EMBL-EBI
WormBase CE20053 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68709 Hypothetical protein T11F1.2 [Caenorhabditis elegans] ref|NP_494411.1| T11F1.2 [Caenorhabditis elegans] 0.0
blast AAC68708 Serpentine receptor, class w protein 60 [Caenorhabditis elegans] ref|NP_494412.2| Serpentine Receptor, class W family member (srw-60) [Caenorhabditis elegans] 1.0E-130
blast AAF40000 Hypothetical protein ZK355.6 [Caenorhabditis elegans] ref|NP_494405.1| ZK355.6 [Caenorhabditis elegans] 1.0E-121
blast AAF40000 Hypothetical protein ZK355.6 [Caenorhabditis elegans] ref|NP_494405.1| ZK355.6 [Caenorhabditis elegans] 1.0E-114
blast AAC68711 Hypothetical protein T11F1.6 [Caenorhabditis elegans] ref|NP_494407.3| T11F1.6 [Caenorhabditis elegans] 1.0E-111
blast AAF40000 Hypothetical protein ZK355.6 [Caenorhabditis elegans] ref|NP_494405.1| ZK355.6 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.5E-32
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.5E-32
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.9E-15
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.5E-32
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.9E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009451 3 396-418,449-471,486-503
GENEFINDER00000009459 3 657-674,702-724,739-756
Sequence
Target Sequence 
>C. ELEGANS:180830_AT
aacccggagatgactaggctggcaatgccagctttgaaggaactcttcgacgctcagcta
ggcccatttatcatgaacctgcgagaccttcacccagaattttgtattacctacgacgaa
atgaagctgttcatggagaaacgtgtgtattttatcaatatcgacgcgaaatattgcact
gaagacagttcgtatttctccggtagttcctgtctgttcacaaatatgagctcacttccc
gattattgcaaatacatttttggagatttaacgattggcgccggagatgagggattcgtt
gttaaattgacgaaagtgtcacatttgttcgggtccctgacaatacggaatactcttttg
gaggatatcgagtttttatcgcaactggagtttatcgcagtgctcgataatgttgatgtc
attcaaattgtatcgaatcagaatttgaactttgtgtattttccgtggatgagtgtaatt
atcacaaggtacaaccgtactgtagttattgataaaaatccaaaactaacgtctcccgag
ttgtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCCGGAGATGACTAGGCTGGCAA 282 145 832 Antisense
TTGAAGGAACTCTTCGACGCTCAGC 181 703 865 Antisense
GAGACCTTCACCCAGAATTTTGTAT 176 393 914 Antisense
GACAGTTCGTATTTCTCCGGTAGTT 219 367 1015 Antisense
GGTAGTTCCTGTCTGTTCACAAATA 279 503 1033 Antisense
AGCTCACTTCCCGATTATTGCAAAT 499 79 1060 Antisense
GGAGATTTAACGATTGGCGCCGGAG 649 495 1093 Antisense
GAAAGTGTCACATTTGTTCGGGTCC 332 359 1143 Antisense
GTTCGGGTCCCTGACAATACGGAAT 298 439 1158 Antisense
AACTTTGTGTATTTTCCGTGGATGA 635 139 1279 Antisense
AACTAACGTCTCCCGAGTTGTCAAT 692 139 1355 Antisense
Sequence Source Affymetrix Proprietary Database