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[180829_at]

Description F23B2.10 /REP_DB=WormBase Gene ID /WP=CE09590 /TR=O45400 /GB=CAB05176.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 11      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 17.7
(-1.5)
A 		25
(-0.9)
A 		1.5
(-3)
A 		68.4
(3)
P 		67
B 29.4
(-1.3)
A 		26.3
(-1.7)
A 		14
(-3)
A 		69.3
(3)
P 		55
C 12.9
(-2)
A 		1.3
(-3)
A 		10
(-2.2)
A 		69.9
(3)
M 		69
avr 20
(-1.9) 		17.5
(-2.1) 		8.5
(-3) 		69.2
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 7.3
(-2.8)
A 		2.4
(-3)
A 		55.4
(-0.7)
M 		142.1
(3)
P 		111.5
(1.7)
P 		25.2
(-2)
A 		140
B 39.1
(-2.4)
A 		25.9
(-3)
A 		44.9
(-2.2)
A 		160.6
(3)
P 		77.9
(-0.7)
P 		38.4
(-2.4)
P 		135
C 27.6
(-2.6)
A 		16.5
(-3)
A 		61.4
(-1.2)
A 		168.8
(3)
P 		97.3
(0.2)
P 		50.3
(-1.7)
P 		152
avr 24.7
(-2.6) 		14.9
(-3) 		53.9
(-1.4) 		157.2
(3) 		95.6
(0.4) 		38
(-2) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.4
(0.8)
A 		5.4
(0.1)
A 		0.4
(-3)
A 		10
(3)
P 		10
B 9.4
(0.2)
A 		6.5
(-1.3)
A 		3.2
(-3)
A 		14.8
(3)
P 		12
C 4.3
(-0.9)
A 		0.4
(-3)
A 		3.5
(-1.4)
A 		11.8
(3)
M 		11
avr 6.7
(-0.4) 		4.1
(-2) 		2.4
(-3) 		12.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		0.8
(-3)
A 		12.1
(-1.1)
M 		36
(3)
P 		33.6
(2.6)
P 		6.1
(-2.1)
A 		35
B 13.6
(-2.1)
A 		8.6
(-3)
A 		10.9
(-2.6)
A 		42.5
(3)
P 		31.6
(1.1)
P 		14.3
(-2)
P 		34
C 10.2
(-1.9)
A 		5
(-3)
A 		15.6
(-0.8)
A 		34
(3)
P 		31.5
(2.5)
P 		16.8
(-0.6)
P 		29
avr 8.4
(-2.3) 		4.8
(-3) 		12.9
(-1.5) 		37.5
(3) 		32.2
(2) 		12.4
(-1.6) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9234
Sequence Type Exemplar sequence
Representative Public ID F23B2.10 NCBI
Target Description F23B2.10 /REP_DB=WormBase Gene ID /WP=CE09590 /TR=O45400 /GB=CAB05176.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069196 NCBI Caenorhabditis elegans F23B2.10 (F23B2.10) mRNA, complete cds. 11/11 None
SNAP00000024647 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9152800:9153675:-1 11/11 None
GENEFINDER00000024656 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9152762:9154301:-1 9/11 None
F23B2.10 ENSEMBL cdna:known chromosome:CEL140:IV:9152800:9154301:-1 gene:F23B2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9152805-9154307(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23B2.10
Entrez Gene 184885 Entrez gene
SwissProt O45400 EMBL-EBI
WormBase CE09590 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05176 Hypothetical protein F23B2.10 [Caenorhabditis elegans] ref|NP_501597.1| F23B2.10 [Caenorhabditis elegans] 0.0
blast CAB05176 Hypothetical protein F23B2.10 [Caenorhabditis elegans] ref|NP_501597.1| F23B2.10 [Caenorhabditis elegans] 1.0E-164
blast CAE74121 Hypothetical protein CBG21784 [Caenorhabditis briggsae] 1.0E-39
blast AAF59466 Hypothetical protein Y38C1AA.6 [Caenorhabditis elegans] ref|NP_499873.1| Y38C1AA.6 [Caenorhabditis elegans] 4.0E-35
blast CAE74121 Hypothetical protein CBG21784 [Caenorhabditis briggsae] 7.0E-35
Sequence
Target Sequence 
>C. ELEGANS:180829_AT
acaatatgtactatcatttcgtcaaagagacctatccggaaataatgaaatggttgaaga
atgatcttgtgagaatatcagcacctccatgttggcaggtattattgaaaattgtatcaa
tcatgactcaagctgcacagtcattattcttaaaatctgcggaacgagaacttcaaattt
caaaagaaaaattgagagattcaaaaggcaattcagagtggcagaaaacggtcgacaaac
ttgagaattttcgagattttcttgaaataaatcacgttgacgctgaaattcaaccaattg
atatgtggaacttttttgtattatgtacaactgaagagctggacaaggtcactgcaataa
taaatcggaatttaaaaattcaaggaaaaagcagcagagaaacattgaaagaagtttatt
atctaacaagagatgttcggaaaactcttccttttcaaattccagagagatttgctggtt
tcattgatcgatttatcagagttttggtcggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATATGTACTATCATTTCGTCAA 354 115 635 Antisense
ATTTCGTCAAAGAGACCTATCCGGA 566 9 650 Antisense
ATCAGCACCTCCATGTTGGCAGGTA 254 27 711 Antisense
GTATCAATCATGACTCAAGCTGCAC 556 453 748 Antisense
CAAGCTGCACAGTCATTATTCTTAA 702 185 763 Antisense
CAGAGTGGCAGAAAACGGTCGACAA 68 203 848 Antisense
AGAGCTGGACAAGGTCACTGCAATA 659 69 969 Antisense
GAGATGTTCGGAAAACTCTTCCTTT 568 395 1064 Antisense
AACTCTTCCTTTTCAAATTCCAGAG 422 141 1077 Antisense
GAGATTTGCTGGTTTCATTGATCGA 430 397 1101 Antisense
GATTTATCAGAGTTTTGGTCGGAGA 694 427 1124 Antisense
Sequence Source Affymetrix Proprietary Database