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[180827_at]

Description F49F1.9 /REP_DB=WormBase Gene ID /WP=CE17092 /TR=Q9GZE0 /GB=AAF99965.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 7.7
(-2.5)
A 		10.7
(-2)
A 		4.3
(-3)
A 		42.8
(3)
A 		39
B 4.7
(-3)
A 		8
(-2.3)
A 		5.9
(-2.7)
A 		32.4
(3)
A 		28
C 3.8
(-2.4)
A 		9.1
(1.3)
A 		11.6
(3)
A 		3
(-3)
A 		9
avr 5.4
(-3) 		9.3
(-1.9) 		7.3
(-2.4) 		26.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3.4
(-2.9)
A 		3.2
(-3)
A 		17.1
(3)
A 		9.3
(-0.4)
A 		8.4
(-0.8)
A 		3.9
(-2.7)
A 		14
B 19
(3)
A 		16.4
(2.1)
A 		1.5
(-3)
A 		1.9
(-2.9)
A 		1.6
(-3)
A 		1.6
(-3)
A 		18
C 5.1
(-2.5)
A 		2.7
(-2.8)
A 		1.7
(-3)
A 		22.1
(0.1)
A 		40.9
(3)
A 		3.2
(-2.8)
A 		39
avr 9.2
(-0.3) 		7.4
(-1.1) 		6.8
(-1.3) 		11.1
(0.5) 		17
(3) 		2.9
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.8
(-1)
A 		2.3
(-1.6)
A 		1.1
(-3)
A 		6.3
(3)
A 		5
B 1.5
(-2.9)
A 		2
(-2.3)
A 		1.4
(-3)
A 		6.9
(3)
A 		6
C 1.3
(-1.6)
A 		2.6
(0.6)
A 		4
(3)
A 		0.5
(-3)
A 		4
avr 1.9
(-3) 		2.3
(-2.1) 		2.2
(-2.3) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.1
(-2)
A 		3.7
(3)
A 		2.4
(0.5)
A 		2.5
(0.7)
A 		1
(-2.2)
A 		3
B 6.6
(3)
A 		5.5
(1.9)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		0.7
(-2.7)
A 		0.6
(-2.8)
A 		6
C 1.9
(-2.3)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		4.4
(-1.1)
A 		13.2
(3)
A 		1.1
(-2.7)
A 		13
avr 3
(-0.3) 		2.5
(-0.9) 		1.5
(-2.2) 		2.4
(-1) 		5.5
(3) 		0.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180827_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11227
Sequence Type Exemplar sequence
Representative Public ID F49F1.9 NCBI
Target Description F49F1.9 /REP_DB=WormBase Gene ID /WP=CE17092 /TR=Q9GZE0 /GB=AAF99965.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068089 NCBI Caenorhabditis elegans F49F1.9 (F49F1.9) mRNA, complete cds. 11/11 None
SNAP00000034592 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4136841:4137560:-1 11/11 None
F49F1.9 ENSEMBL cdna:known chromosome:CEL140:IV:4136841:4137560:-1 gene:F49F1.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034599 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4136846-4137566(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49F1.9
Entrez Gene 186065 Entrez gene
SwissProt Q9GZE0 EMBL-EBI
WormBase CE17092 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99965 Hypothetical protein F49F1.9 [Caenorhabditis elegans] ref|NP_500490.1| F49F1.9 [Caenorhabditis elegans] 1.0E-85
blast CAB63394 Hypothetical protein F46A8.8 [Caenorhabditis elegans] emb|CAB63201.1| Hypothetical protein F46A8.8 [Caenorhabditis elegans] ref|NP_492881.1| F46A8.8 [Caenorhabditis elegans] 3.0E-67
blast CAB04391 Hypothetical protein F46A8.5 [Caenorhabditis elegans] ref|NP_492883.1| F46A8.5 [Caenorhabditis elegans] 1.0E-64
Sequence
Target Sequence 
>C. ELEGANS:180827_AT
tttggatttgtactcgacaccggtggtggatattatggctcaggatcctactctgattcc
tccgatgattacagtgggcgacgtggtggtgggcggcataggcctccaagacccccaagg
cccccaaggccacccaggccaacacctaagccagtagaaaacatggaaactcttcatggg
ccatttgggcccggtgtgcgttatccgattcctggaggatattgggctacaggcaaggtc
ctccgattttatggtgttcctggacgaggtagatggtcgattaacctggaccgagaaaag
gagtggctgtttcatttcgcgtcacagcctgatttaagacgtgttgtcagaacccgtcat
ttgaatggaaagttcctcctcggtgacacatatggtggaaacccatttccagctggtgct
aatttcaatgtgactatgatcaatcagccaacgcatattgagatttatgtcaatcaggtt
ttcttcacaaactacaatcatcgaactcccaatccatcgagaaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGATTTGTACTCGACACCGGTG 213 665 61 Antisense
ACACCGGTGGTGGATATTATGGCTC 45 107 77 Antisense
ATTATGGCTCAGGATCCTACTCTGA 248 11 92 Antisense
GAAACTCTTCATGGGCCATTTGGGC 264 355 226 Antisense
GATGGTCGATTAACCTGGACCGAGA 13 407 332 Antisense
GTCACAGCCTGATTTAAGACGTGTT 608 463 381 Antisense
ACGTGTTGTCAGAACCCGTCATTTG 458 95 399 Antisense
GAATGGAAAGTTCCTCCTCGGTGAC 279 333 423 Antisense
AACCCATTTCCAGCTGGTGCTAATT 94 143 460 Antisense
AACTACAATCATCGAACTCCCAATC 157 139 550 Antisense
GAACTCCCAATCCATCGAGAAACTA 214 349 563 Antisense
Sequence Source Affymetrix Proprietary Database