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[180826_at]

Description C03A7.1 /REP_DB=WormBase Gene ID /WP=CE07859 /TR=O16509 /GB=AAB65998.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 4.1
(-3)
A 		30.4
(3)
A 		14
(-0.7)
A 		8.1
(-2.1)
A 		26
B 4.3
(-2.9)
A 		8.6
(3)
A 		4.2
(-3)
A 		8.2
(2.5)
A 		4
C 4.3
(-3)
A 		6.4
(-2.7)
A 		53.9
(3)
A 		4.3
(-3)
A 		50
avr 4.2
(-3) 		15.1
(0.3) 		24
(3) 		6.9
(-2.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 10.7
(3)
A 		7.1
(0.5)
A 		4.8
(-1.2)
A 		2.2
(-3)
A 		4.4
(-1.4)
A 		2.8
(-2.6)
A 		9
B 5.6
(0.5)
A 		8
(3)
A 		2.3
(-3)
A 		4.3
(-0.9)
A 		3.7
(-1.5)
A 		2.4
(-2.9)
A 		6
C 5.3
(1.4)
A 		2.3
(-2.4)
A 		6.6
(3)
A 		4.4
(0.3)
A 		6.4
(2.8)
A 		1.8
(-3)
A 		5
avr 7.2
(3) 		5.8
(1.3) 		4.6
(-0.2) 		3.6
(-1.4) 		4.8
(0.1) 		2.3
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.5
(-2.7)
A 		6.6
(3)
A 		3.7
(-0.2)
A 		1.2
(-3)
A 		5
B 1.4
(-0.8)
A 		2.1
(3)
A 		1
(-3)
A 		1.8
(1.4)
A 		1
C 1.4
(-2.8)
A 		1.8
(-2.6)
A 		18.8
(3)
A 		0.7
(-3)
A 		18
avr 1.4
(-2.8) 		3.5
(-0.9) 		7.8
(3) 		1.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2
(1.5)
A 		2.5
(3)
A 		1.1
(-1.2)
A 		0.5
(-3)
A 		1.3
(-0.6)
A 		0.7
(-2.4)
A 		2
B 1.9
(0.7)
A 		2.7
(3)
A 		0.6
(-3)
A 		1.1
(-1.6)
A 		1.5
(-0.4)
A 		0.9
(-2.1)
A 		2
C 2
(2.6)
A 		0.7
(-2.6)
A 		1.7
(1.4)
A 		0.9
(-1.8)
A 		2.1
(3)
A 		0.6
(-3)
A 		2
avr 2
(3) 		2
(3) 		1.1
(-1.2) 		0.8
(-2.5) 		1.6
(1.2) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14845
Sequence Type Exemplar sequence
Representative Public ID C03A7.1 NCBI
Target Description C03A7.1 /REP_DB=WormBase Gene ID /WP=CE07859 /TR=O16509 /GB=AAB65998.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071990 NCBI Caenorhabditis elegans C03A7.1 (C03A7.1) mRNA, complete cds. 11/11 None
SNAP00000035291 ENSEMBL cdna:SNAP chromosome:CEL140:V:5188815:5190530:1 11/11 None
GENEFINDER00000035301 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5185877:5190530:1 11/11 None
C03A7.1 ENSEMBL cdna:known chromosome:CEL140:V:5185877:5190530:1 gene:C03A7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C03A7.1
Entrez Gene 182133 Entrez gene
SwissProt O16509 EMBL-EBI
WormBase CE07859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65998 Hypothetical protein C03A7.1 [Caenorhabditis elegans] ref|NP_504391.1| C03A7.1 [Caenorhabditis elegans] 0.0
blast T27790 hypothetical protein ZK228.2 - Caenorhabditis elegans 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180826_AT
caaaagatctgtgcgccaactcattcatctcgaagtcgagtcctcggaccccgacagttt
ccctgaaaacattaagcagggagatgataaagagagaatgatggatgcgagaaagatcgt
ccaacatctgtcgactacctcactgccaaagccttcaactgccctctttgatcctcgtaa
tgcccattactctcctgagctgtttcctcgatcgacactacccaaccttgctgaaacgtc
tgagaataccgatgacctaaatacccaaaacttgaatatccccaccataccgaatcccaa
ttcaataccgaagaagcgactggaaggacacgagattatcggaggagatacgattttcga
aaacatcgacttagacttaccgaacgaagagtatgaggaagcagtagtcagacaggaagc
agaagctaccgaggatatgcccacggcatatcccggtagaacccggcctgtactcgcgag
gaaagccaaaaaacctgtgtactacaactatttccatcataccacgattcaagtcacgtc
gttgttttcaaccccggagtgttgtgagatgggctgggttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAGATCTGTGCGCCAACTCATT 167 191 3732 Antisense
CCAACTCATTCATCTCGAAGTCGAG 279 277 3747 Antisense
AAGATCGTCCAACATCTGTCGACTA 355 155 3844 Antisense
CCACCATACCGAATCCCAATTCAAT 365 273 4013 Antisense
AACATCGACTTAGACTTACCGAACG 470 117 4093 Antisense
AGAAGCTACCGAGGATATGCCCACG 577 73 4152 Antisense
CCACGGCATATCCCGGTAGAACCCG 707 271 4172 Antisense
CGGCCTGTACTCGCGAGGAAAGCCA 64 239 4195 Antisense
CTACAACTATTTCCATCATACCACG 77 227 4233 Antisense
TCAAGTCACGTCGTTGTTTTCAACC 250 633 4260 Antisense
GTGTTGTGAGATGGGCTGGGTTCCT 155 485 4290 Antisense
Sequence Source Affymetrix Proprietary Database