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[180825_at]

Description Y26E6A.2 /REP_DB=WormBase Gene ID /WP=CE16608 /TR=O62419 /GB=CAA19473.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 80      6grp_total > 61      4grp_total > 51      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 162.3
(-0.5)
P 		140.4
(-2.7)
P 		197
(3)
P 		137.3
(-3)
P 		60
B 150.5
(-2.3)
P 		331.8
(3)
P 		189.7
(-1.2)
P 		127.8
(-3)
P 		204
C 174.5
(0.2)
P 		252.9
(3)
P 		178.6
(0.4)
P 		83.9
(-3)
P 		169
avr 162.4
(-0.8) 		241.7
(3) 		188.4
(0.4) 		116.3
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 180.4
(-2.9)
P 		206.5
(-1.1)
P 		215.4
(-0.5)
P 		264.9
(3)
P 		252.6
(2.1)
P 		179.5
(-3)
P 		85
B 249.9
(1.3)
P 		179.3
(-0.7)
P 		236.8
(1)
P 		305.8
(3)
P 		230.7
(0.8)
P 		102.7
(-3)
P 		203
C 237.7
(2.2)
P 		213.2
(1.2)
P 		258.9
(3)
P 		156
(-1.1)
P 		196.9
(0.6)
P 		106.5
(-3)
P 		152
avr 222.7
(2) 		199.7
(0.7) 		237
(2.7) 		242.2
(3) 		226.7
(2.2) 		129.6
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 59.1
(3)
P 		30.5
(-1.4)
P 		51.5
(1.8)
P 		20.1
(-3)
P 		39
B 48
(-0.7)
P 		82
(3)
P 		44
(-1.2)
P 		27.2
(-3)
P 		55
C 57.8
(1.5)
P 		72.7
(3)
P 		62.2
(1.9)
P 		14.1
(-3)
P 		59
avr 55
(2) 		61.7
(3) 		52.6
(1.7) 		20.5
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 33.3
(-3)
P 		73.5
(2.6)
P 		46.9
(-1.1)
P 		67.2
(1.7)
P 		76.2
(3)
P 		43.7
(-1.5)
P 		43
B 87
(2.3)
P 		59.7
(-0.7)
P 		57.5
(-0.9)
P 		81
(1.6)
P 		93.7
(3)
P 		38.3
(-3)
P 		55
C 88.1
(3)
P 		65.1
(0.6)
P 		65.9
(0.7)
P 		31.4
(-3)
P 		63.7
(0.4)
P 		35.6
(-2.6)
P 		57
avr 69.5
(1.7) 		66.1
(1.2) 		56.8
(-0.3) 		59.9
(0.2) 		77.9
(3) 		39.2
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17846
Sequence Type Exemplar sequence
Representative Public ID Y26E6A.2 NCBI
Target Description Y26E6A.2 /REP_DB=WormBase Gene ID /WP=CE16608 /TR=O62419 /GB=CAA19473.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077915 NCBI Caenorhabditis elegans Y26E6A.2 (Y26E6A.2) mRNA, complete cds. 11/11 None
SNAP00000015477 ENSEMBL cdna:SNAP chromosome:CEL140:X:13911146:13912890:-1 11/11 None
GENEFINDER00000015481 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13911146:13912890:-1 11/11 None
Y26E6A.2 ENSEMBL cdna:known chromosome:CEL140:X:13910858:13912901:-1 gene:Y26E6A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025167 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13911145-13912890(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26E6A.2
Entrez Gene 189552 Entrez gene
SwissProt O62419 EMBL-EBI
WormBase CE16608 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19473 Hypothetical protein Y26E6A.2 [Caenorhabditis elegans] ref|NP_510316.1| Y26E6A.2 [Caenorhabditis elegans] 0.0
blast CAE63066 Hypothetical protein CBG07348 [Caenorhabditis briggsae] 1.0E-138
Sequence
Target Sequence 
>C. ELEGANS:180825_AT
ccagctgctgcgtaacacaactattttaaaaattgtcaccactgatgatttcgaaccgga
atactgtgaagctgtgcacaacttcgttggatccagaacatttaaaagaatcattgtcaa
gggtttcgagtacacggagaatttgaaaatgatggtggaaatgtttgacaaagaagttgt
ggagattgaagtgaacgcactaactgacgacttcattccgttcccagatatcaaaaccat
atccatccgcgacactctcaacagggatcacggagaacggctcttttctgcgaagcattt
tgtcaacatcaattgtgctctcaacaatatcgacacattccgaaaagctcttcgtgattg
ggataatggacaccgagaagttggtagatgggtaattctgaaacaattcaccatcttcca
aacaccctttggtagacgtcatcggccgaagacttccttccgaaaggggtatttggagtt
tatcagtgagctcaactcatcacaaatgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCTGCTGCGTAACACAACTATT 271 273 702 Antisense
GTCACCACTGATGATTTCGAACCGG 672 465 736 Antisense
GCTGTGCACAACTTCGTTGGATCCA 598 295 772 Antisense
CGCACTAACTGACGACTTCATTCCG 703 253 897 Antisense
CTTCATTCCGTTCCCAGATATCAAA 537 221 912 Antisense
CGACACTCTCAACAGGGATCACGGA 591 251 951 Antisense
AACGGCTCTTTTCTGCGAAGCATTT 369 143 977 Antisense
GTCAACATCAATTGTGCTCTCAACA 214 465 1003 Antisense
GAAACAATTCACCATCTTCCAAACA 33 357 1101 Antisense
AACACCCTTTGGTAGACGTCATCGG 81 135 1122 Antisense
GAGCTCAACTCATCACAAATGCCAC 32 389 1189 Antisense
Sequence Source Affymetrix Proprietary Database